Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03620 and IAI47_03625 are separated by 70 nucleotides IAI47_03625 and IAI47_03630 are separated by 75 nucleotides IAI47_03630 and IAI47_03635 overlap by 2 nucleotides IAI47_03635 and IAI47_03640 are separated by 55 nucleotides
IAI47_03620: IAI47_03620 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 753,415 to 754,146
_03620
IAI47_03625: IAI47_03625 - deoxyribonuclease I, at 754,217 to 754,921
_03625
IAI47_03630: IAI47_03630 - SprT family zinc-dependent metalloprotease, at 754,997 to 755,509
_03630
IAI47_03635: IAI47_03635 - hypothetical protein, at 755,508 to 755,666
_03635
IAI47_03640: IAI47_03640 - glycosyltransferase, at 755,722 to 756,870
_03640
Position (kb) 754
755
756 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 754.008 kb on + strand, within IAI47_03620 at 754.009 kb on - strand, within IAI47_03620 at 754.009 kb on - strand, within IAI47_03620 at 754.009 kb on - strand, within IAI47_03620 at 754.009 kb on - strand, within IAI47_03620 at 754.063 kb on + strand, within IAI47_03620 at 754.063 kb on + strand, within IAI47_03620 at 754.063 kb on + strand, within IAI47_03620 at 754.064 kb on - strand, within IAI47_03620 at 754.064 kb on - strand, within IAI47_03620 at 754.064 kb on - strand, within IAI47_03620 at 754.064 kb on - strand, within IAI47_03620 at 754.127 kb on + strand at 754.127 kb on + strand at 754.127 kb on + strand at 754.127 kb on + strand at 754.127 kb on + strand at 754.127 kb on + strand at 754.128 kb on - strand at 754.128 kb on - strand at 754.138 kb on + strand at 754.138 kb on + strand at 754.138 kb on + strand at 754.138 kb on + strand at 754.139 kb on - strand at 754.139 kb on - strand at 754.139 kb on - strand at 754.146 kb on + strand at 754.147 kb on - strand at 754.147 kb on - strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.200 kb on - strand at 754.200 kb on - strand at 754.200 kb on - strand at 754.200 kb on - strand at 754.200 kb on - strand at 754.200 kb on - strand at 754.204 kb on + strand at 754.205 kb on - strand at 754.205 kb on - strand at 754.205 kb on - strand at 754.205 kb on - strand at 754.242 kb on + strand at 754.242 kb on + strand at 754.242 kb on + strand at 754.242 kb on + strand at 754.243 kb on - strand at 754.243 kb on - strand at 754.243 kb on - strand at 754.243 kb on - strand at 754.243 kb on - strand at 754.311 kb on + strand, within IAI47_03625 at 754.311 kb on + strand, within IAI47_03625 at 754.311 kb on + strand, within IAI47_03625 at 754.312 kb on - strand, within IAI47_03625 at 754.368 kb on + strand, within IAI47_03625 at 754.369 kb on - strand, within IAI47_03625 at 754.383 kb on + strand, within IAI47_03625 at 754.383 kb on + strand, within IAI47_03625 at 754.383 kb on + strand, within IAI47_03625 at 754.383 kb on + strand, within IAI47_03625 at 754.384 kb on - strand, within IAI47_03625 at 754.384 kb on - strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.390 kb on - strand, within IAI47_03625 at 754.390 kb on - strand, within IAI47_03625 at 754.390 kb on - strand, within IAI47_03625 at 754.449 kb on + strand, within IAI47_03625 at 754.473 kb on + strand, within IAI47_03625 at 754.504 kb on - strand, within IAI47_03625 at 754.678 kb on + strand, within IAI47_03625 at 754.678 kb on + strand, within IAI47_03625 at 754.678 kb on + strand, within IAI47_03625 at 754.678 kb on + strand, within IAI47_03625 at 754.679 kb on - strand, within IAI47_03625 at 754.679 kb on - strand, within IAI47_03625 at 754.679 kb on - strand, within IAI47_03625 at 754.714 kb on - strand, within IAI47_03625 at 754.765 kb on + strand, within IAI47_03625 at 754.776 kb on + strand, within IAI47_03625 at 754.776 kb on + strand, within IAI47_03625 at 754.837 kb on + strand, within IAI47_03625 at 754.837 kb on + strand, within IAI47_03625 at 754.837 kb on + strand, within IAI47_03625 at 754.838 kb on - strand, within IAI47_03625 at 754.848 kb on + strand, within IAI47_03625 at 754.848 kb on + strand, within IAI47_03625 at 754.848 kb on + strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.852 kb on + strand at 754.852 kb on + strand at 754.852 kb on + strand at 754.852 kb on + strand at 754.852 kb on + strand at 754.852 kb on + strand at 754.852 kb on + strand at 754.853 kb on - strand at 754.853 kb on - strand at 754.853 kb on - strand at 754.853 kb on - strand at 754.853 kb on - strand at 754.907 kb on + strand at 754.907 kb on + strand at 754.907 kb on + strand at 754.908 kb on - strand at 754.921 kb on + strand at 754.921 kb on + strand at 754.921 kb on + strand at 754.921 kb on + strand at 754.921 kb on + strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.933 kb on + strand at 754.933 kb on + strand at 754.933 kb on + strand at 754.933 kb on + strand at 754.933 kb on + strand at 754.934 kb on - strand at 754.934 kb on - strand at 754.937 kb on + strand at 754.937 kb on + strand at 754.937 kb on + strand at 754.937 kb on + strand at 754.938 kb on - strand at 754.938 kb on - strand at 754.940 kb on + strand at 754.940 kb on + strand at 754.942 kb on - strand at 754.961 kb on - strand at 754.975 kb on + strand at 754.976 kb on - strand at 754.976 kb on - strand at 754.976 kb on - strand at 754.976 kb on - strand at 755.008 kb on + strand at 755.009 kb on - strand at 755.052 kb on + strand, within IAI47_03630 at 755.052 kb on + strand, within IAI47_03630 at 755.053 kb on - strand, within IAI47_03630 at 755.053 kb on - strand, within IAI47_03630 at 755.053 kb on - strand, within IAI47_03630 at 755.053 kb on - strand, within IAI47_03630 at 755.124 kb on + strand, within IAI47_03630 at 755.297 kb on - strand, within IAI47_03630 at 755.391 kb on + strand, within IAI47_03630 at 755.391 kb on + strand, within IAI47_03630 at 755.391 kb on + strand, within IAI47_03630 at 755.392 kb on - strand, within IAI47_03630 at 755.426 kb on + strand, within IAI47_03630 at 755.426 kb on + strand, within IAI47_03630 at 755.427 kb on - strand, within IAI47_03630 at 755.467 kb on + strand at 755.468 kb on - strand at 755.521 kb on + strand at 755.522 kb on - strand at 755.550 kb on - strand, within IAI47_03635 at 755.555 kb on + strand, within IAI47_03635 at 755.556 kb on - strand, within IAI47_03635 at 755.576 kb on + strand, within IAI47_03635 at 755.576 kb on + strand, within IAI47_03635 at 755.577 kb on - strand, within IAI47_03635 at 755.577 kb on - strand, within IAI47_03635 at 755.577 kb on - strand, within IAI47_03635 at 755.577 kb on - strand, within IAI47_03635 at 755.577 kb on - strand, within IAI47_03635 at 755.577 kb on - strand, within IAI47_03635 at 755.577 kb on - strand, within IAI47_03635 at 755.578 kb on + strand, within IAI47_03635 at 755.578 kb on + strand, within IAI47_03635 at 755.579 kb on - strand, within IAI47_03635 at 755.579 kb on - strand, within IAI47_03635 at 755.579 kb on - strand, within IAI47_03635 at 755.579 kb on - strand, within IAI47_03635 at 755.579 kb on - strand, within IAI47_03635 at 755.579 kb on - strand, within IAI47_03635 at 755.579 kb on - strand, within IAI47_03635 at 755.607 kb on + strand, within IAI47_03635 at 755.608 kb on - strand, within IAI47_03635 at 755.608 kb on - strand, within IAI47_03635 at 755.664 kb on + strand at 755.665 kb on - strand at 755.665 kb on - strand at 755.665 kb on - strand at 755.668 kb on + strand at 755.668 kb on + strand at 755.668 kb on + strand at 755.668 kb on + strand at 755.669 kb on - strand at 755.669 kb on - strand at 755.669 kb on - strand at 755.669 kb on - strand at 755.669 kb on - strand at 755.670 kb on + strand at 755.670 kb on + strand at 755.670 kb on + strand at 755.670 kb on + strand at 755.670 kb on + strand at 755.670 kb on + strand at 755.670 kb on + strand at 755.670 kb on + strand at 755.670 kb on + strand at 755.670 kb on + strand at 755.671 kb on - strand at 755.671 kb on - strand at 755.671 kb on - strand at 755.671 kb on - strand at 755.671 kb on - strand at 755.674 kb on + strand at 755.674 kb on + strand at 755.674 kb on + strand at 755.675 kb on - strand at 755.675 kb on - strand at 755.675 kb on - strand at 755.676 kb on - strand at 755.687 kb on - strand at 755.691 kb on + strand at 755.692 kb on - strand at 755.692 kb on - strand at 755.696 kb on + strand at 755.696 kb on + strand at 755.696 kb on + strand at 755.696 kb on + strand at 755.697 kb on - strand at 755.697 kb on - strand at 755.697 kb on - strand at 755.697 kb on - strand at 755.697 kb on - strand at 755.754 kb on + strand at 755.754 kb on + strand at 755.754 kb on + strand at 755.755 kb on - strand at 755.770 kb on - strand at 755.770 kb on - strand at 755.775 kb on + strand at 755.833 kb on - strand at 755.901 kb on + strand, within IAI47_03640 at 755.901 kb on + strand, within IAI47_03640 at 755.901 kb on + strand, within IAI47_03640 at 755.904 kb on + strand, within IAI47_03640 at 755.904 kb on + strand, within IAI47_03640 at 755.904 kb on + strand, within IAI47_03640 at 755.905 kb on - strand, within IAI47_03640 at 755.905 kb on - strand, within IAI47_03640 at 755.905 kb on - strand, within IAI47_03640 at 755.905 kb on - strand, within IAI47_03640 at 755.907 kb on + strand, within IAI47_03640 at 755.907 kb on + strand, within IAI47_03640 at 755.907 kb on + strand, within IAI47_03640 at 755.908 kb on - strand, within IAI47_03640 at 755.908 kb on - strand, within IAI47_03640 at 755.908 kb on - strand, within IAI47_03640 at 755.908 kb on - strand, within IAI47_03640 at 756.003 kb on + strand, within IAI47_03640 at 756.040 kb on + strand, within IAI47_03640 at 756.041 kb on - strand, within IAI47_03640 at 756.099 kb on + strand, within IAI47_03640 at 756.102 kb on + strand, within IAI47_03640 at 756.102 kb on + strand, within IAI47_03640 at 756.102 kb on + strand, within IAI47_03640 at 756.102 kb on + strand, within IAI47_03640 at 756.103 kb on - strand, within IAI47_03640 at 756.103 kb on - strand, within IAI47_03640 at 756.103 kb on - strand, within IAI47_03640 at 756.103 kb on - strand, within IAI47_03640 at 756.103 kb on - strand, within IAI47_03640 at 756.103 kb on - strand, within IAI47_03640 at 756.103 kb on - strand, within IAI47_03640 at 756.175 kb on + strand, within IAI47_03640 at 756.175 kb on + strand, within IAI47_03640 at 756.175 kb on + strand, within IAI47_03640 at 756.175 kb on + strand, within IAI47_03640 at 756.175 kb on + strand, within IAI47_03640 at 756.175 kb on + strand, within IAI47_03640 at 756.175 kb on + strand, within IAI47_03640 at 756.176 kb on - strand, within IAI47_03640 at 756.176 kb on - strand, within IAI47_03640 at 756.176 kb on - strand, within IAI47_03640 at 756.176 kb on - strand, within IAI47_03640 at 756.204 kb on + strand, within IAI47_03640 at 756.205 kb on - strand, within IAI47_03640 at 756.240 kb on - strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.271 kb on + strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.272 kb on - strand, within IAI47_03640 at 756.274 kb on - strand, within IAI47_03640 at 756.331 kb on + strand, within IAI47_03640 at 756.331 kb on + strand, within IAI47_03640 at 756.332 kb on - strand, within IAI47_03640 at 756.332 kb on - strand, within IAI47_03640 at 756.333 kb on + strand, within IAI47_03640 at 756.333 kb on + strand, within IAI47_03640 at 756.333 kb on + strand, within IAI47_03640 at 756.334 kb on - strand, within IAI47_03640 at 756.402 kb on + strand, within IAI47_03640 at 756.403 kb on - strand, within IAI47_03640 at 756.460 kb on + strand, within IAI47_03640 at 756.460 kb on + strand, within IAI47_03640 at 756.460 kb on + strand, within IAI47_03640 at 756.460 kb on + strand, within IAI47_03640 at 756.492 kb on + strand, within IAI47_03640 at 756.493 kb on - strand, within IAI47_03640 at 756.493 kb on - strand, within IAI47_03640 at 756.493 kb on - strand, within IAI47_03640 at 756.493 kb on - strand, within IAI47_03640 at 756.493 kb on - strand, within IAI47_03640
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 754,008 + IAI47_03620 0.81 +0.8 754,009 - IAI47_03620 0.81 +0.3 754,009 - IAI47_03620 0.81 -1.1 754,009 - IAI47_03620 0.81 -0.9 754,009 - IAI47_03620 0.81 -0.8 754,063 + IAI47_03620 0.89 +1.1 754,063 + IAI47_03620 0.89 -3.0 754,063 + IAI47_03620 0.89 -0.8 754,064 - IAI47_03620 0.89 +1.6 754,064 - IAI47_03620 0.89 +0.9 754,064 - IAI47_03620 0.89 +0.9 754,064 - IAI47_03620 0.89 -0.9 754,127 + +1.2 754,127 + -1.2 754,127 + +0.3 754,127 + +0.7 754,127 + +0.9 754,127 + +1.3 754,128 - -0.1 754,128 - +1.6 754,138 + +0.1 754,138 + +0.2 754,138 + -0.8 754,138 + +0.6 754,139 - -1.3 754,139 - +1.0 754,139 - +0.3 754,146 + +0.1 754,147 - +2.1 754,147 - -0.6 754,199 + -1.1 754,199 + +0.1 754,199 + +0.9 754,199 + +0.2 754,199 + -0.3 754,199 + +0.1 754,199 + -1.8 754,199 + -1.0 754,199 + +0.1 754,199 + -2.2 754,199 + +0.4 754,199 + -1.2 754,200 - +0.1 754,200 - -1.4 754,200 - -0.7 754,200 - +1.6 754,200 - +3.6 754,200 - -1.8 754,204 + +0.8 754,205 - +0.1 754,205 - -2.6 754,205 - +0.6 754,205 - -2.0 754,242 + -0.9 754,242 + +0.4 754,242 + -2.9 754,242 + +1.3 754,243 - +0.6 754,243 - +1.8 754,243 - -1.7 754,243 - -0.3 754,243 - -0.3 754,311 + IAI47_03625 0.13 -0.4 754,311 + IAI47_03625 0.13 -1.4 754,311 + IAI47_03625 0.13 -0.2 754,312 - IAI47_03625 0.13 +0.6 754,368 + IAI47_03625 0.21 -1.4 754,369 - IAI47_03625 0.22 +0.1 754,383 + IAI47_03625 0.24 -2.5 754,383 + IAI47_03625 0.24 +1.4 754,383 + IAI47_03625 0.24 +0.9 754,383 + IAI47_03625 0.24 +0.2 754,384 - IAI47_03625 0.24 +2.3 754,384 - IAI47_03625 0.24 -1.4 754,389 + IAI47_03625 0.24 -0.2 754,389 + IAI47_03625 0.24 +0.2 754,389 + IAI47_03625 0.24 +1.4 754,389 + IAI47_03625 0.24 +0.9 754,389 + IAI47_03625 0.24 +0.4 754,389 + IAI47_03625 0.24 +1.0 754,389 + IAI47_03625 0.24 +1.2 754,389 + IAI47_03625 0.24 -1.2 754,390 - IAI47_03625 0.25 +2.1 754,390 - IAI47_03625 0.25 +0.4 754,390 - IAI47_03625 0.25 -0.3 754,449 + IAI47_03625 0.33 -1.0 754,473 + IAI47_03625 0.36 +1.5 754,504 - IAI47_03625 0.41 +1.4 754,678 + IAI47_03625 0.65 -0.7 754,678 + IAI47_03625 0.65 +0.4 754,678 + IAI47_03625 0.65 +1.4 754,678 + IAI47_03625 0.65 +0.3 754,679 - IAI47_03625 0.66 -0.2 754,679 - IAI47_03625 0.66 +0.3 754,679 - IAI47_03625 0.66 +0.2 754,714 - IAI47_03625 0.70 +0.9 754,765 + IAI47_03625 0.78 -2.4 754,776 + IAI47_03625 0.79 -1.6 754,776 + IAI47_03625 0.79 -0.1 754,837 + IAI47_03625 0.88 -1.3 754,837 + IAI47_03625 0.88 -1.0 754,837 + IAI47_03625 0.88 -1.9 754,838 - IAI47_03625 0.88 +1.6 754,848 + IAI47_03625 0.90 -2.0 754,848 + IAI47_03625 0.90 -0.7 754,848 + IAI47_03625 0.90 -0.5 754,849 - IAI47_03625 0.90 -0.1 754,849 - IAI47_03625 0.90 -0.6 754,849 - IAI47_03625 0.90 -0.4 754,849 - IAI47_03625 0.90 -0.4 754,849 - IAI47_03625 0.90 -1.4 754,849 - IAI47_03625 0.90 -1.4 754,849 - IAI47_03625 0.90 +0.6 754,852 + +0.7 754,852 + -1.8 754,852 + -1.4 754,852 + +1.9 754,852 + +1.8 754,852 + +0.7 754,852 + -1.4 754,853 - +2.1 754,853 - +1.4 754,853 - +0.3 754,853 - +0.3 754,853 - +0.1 754,907 + +1.4 754,907 + +1.2 754,907 + +0.9 754,908 - -1.1 754,921 + -0.3 754,921 + +1.7 754,921 + +1.6 754,921 + -0.7 754,921 + +1.2 754,922 - +1.9 754,922 - -1.0 754,922 - +0.0 754,922 - +0.8 754,922 - -1.0 754,922 - +1.7 754,922 - -2.9 754,933 + -1.6 754,933 + -2.0 754,933 + +0.4 754,933 + -0.1 754,933 + -1.4 754,934 - -0.1 754,934 - -0.8 754,937 + +1.4 754,937 + +2.4 754,937 + +0.6 754,937 + +0.6 754,938 - +1.3 754,938 - +0.3 754,940 + +0.9 754,940 + -1.4 754,942 - -0.6 754,961 - -0.2 754,975 + -0.5 754,976 - +1.3 754,976 - +0.9 754,976 - -1.0 754,976 - +3.2 755,008 + +1.0 755,009 - -1.0 755,052 + IAI47_03630 0.11 +0.6 755,052 + IAI47_03630 0.11 -0.8 755,053 - IAI47_03630 0.11 -0.8 755,053 - IAI47_03630 0.11 -2.0 755,053 - IAI47_03630 0.11 -2.2 755,053 - IAI47_03630 0.11 +0.3 755,124 + IAI47_03630 0.25 +0.3 755,297 - IAI47_03630 0.58 -1.1 755,391 + IAI47_03630 0.77 +1.6 755,391 + IAI47_03630 0.77 +0.1 755,391 + IAI47_03630 0.77 -0.0 755,392 - 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Or see this region's nucleotide sequence