Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21520 and PGA1_c21525 are separated by 202 nucleotides PGA1_c21525 and PGA1_c21530 are separated by 88 nucleotides PGA1_c21530 and PGA1_c21540 are separated by 6 nucleotides
PGA1_c21520: PGA1_c21520 - hypothetical protein, at 2,230,107 to 2,231,042
_c21520
PGA1_c21525: PGA1_c21525 - hypothetical protein, at 2,231,245 to 2,231,850
_c21525
PGA1_c21530: PGA1_c21530 - hypothetical protein, at 2,231,939 to 2,232,466
_c21530
PGA1_c21540: PGA1_c21540 - propionyl-CoA carboxylase alpha chain, at 2,232,473 to 2,234,518
_c21540
Position (kb)
2231
2232
2233 Strain fitness (log2 ratio)
-2
-1
0
1 at 2231.051 kb on - strand at 2231.051 kb on - strand at 2231.056 kb on - strand at 2231.056 kb on - strand at 2231.098 kb on + strand at 2231.098 kb on + strand at 2231.098 kb on + strand at 2231.098 kb on + strand at 2231.106 kb on - strand at 2231.188 kb on + strand at 2231.196 kb on - strand at 2231.766 kb on + strand, within PGA1_c21525 at 2232.081 kb on - strand, within PGA1_c21530 at 2232.154 kb on - strand, within PGA1_c21530 at 2232.198 kb on + strand, within PGA1_c21530 at 2232.206 kb on - strand, within PGA1_c21530
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,231,051 - +0.8 2,231,051 - +0.6 2,231,056 - +0.6 2,231,056 - -1.7 2,231,098 + +0.2 2,231,098 + +1.2 2,231,098 + +0.7 2,231,098 + +0.1 2,231,106 - -1.8 2,231,188 + -1.4 2,231,196 - -0.1 2,231,766 + PGA1_c21525 0.86 -0.2 2,232,081 - PGA1_c21530 0.27 -0.3 2,232,154 - PGA1_c21530 0.41 -0.2 2,232,198 + PGA1_c21530 0.49 -0.0 2,232,206 - PGA1_c21530 0.51 -1.2
Or see this region's nucleotide sequence