Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS24625 and RS_RS24630 are separated by 155 nucleotides RS_RS24630 and RS_RS24635 are separated by 105 nucleotides RS_RS24635 and RS_RS24640 are separated by 224 nucleotides
RS_RS24625: RS_RS24625 - universal stress protein, at 1,964,269 to 1,964,724
_RS24625
RS_RS24630: RS_RS24630 - DUF3293 domain-containing protein, at 1,964,880 to 1,965,338
_RS24630
RS_RS24635: RS_RS24635 - hypothetical protein, at 1,965,444 to 1,965,956
_RS24635
RS_RS24640: RS_RS24640 - cytochrome B558 subunit A, at 1,966,181 to 1,967,335
_RS24640
Position (kb) 1965
1966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1964.573 kb on + strand, within RS_RS24625 at 1964.573 kb on + strand, within RS_RS24625 at 1964.573 kb on + strand, within RS_RS24625 at 1964.574 kb on - strand, within RS_RS24625 at 1964.574 kb on - strand, within RS_RS24625 at 1964.576 kb on + strand, within RS_RS24625 at 1964.576 kb on + strand, within RS_RS24625 at 1964.577 kb on - strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.615 kb on + strand, within RS_RS24625 at 1964.616 kb on - strand, within RS_RS24625 at 1964.616 kb on - strand, within RS_RS24625 at 1964.616 kb on - strand, within RS_RS24625 at 1964.616 kb on - strand, within RS_RS24625 at 1964.616 kb on - strand, within RS_RS24625 at 1964.616 kb on - strand, within RS_RS24625 at 1964.616 kb on - strand, within RS_RS24625 at 1964.616 kb on - strand, within RS_RS24625 at 1964.616 kb on - strand, within RS_RS24625 at 1964.720 kb on + strand at 1964.720 kb on + strand at 1964.720 kb on + strand at 1964.720 kb on + strand at 1964.720 kb on + strand at 1964.720 kb on + strand at 1964.720 kb on + strand at 1964.721 kb on - strand at 1964.721 kb on - strand at 1964.721 kb on - strand at 1964.721 kb on - strand at 1964.721 kb on - strand at 1964.721 kb on - strand at 1964.721 kb on - strand at 1964.724 kb on + strand at 1964.724 kb on + strand at 1964.724 kb on + strand at 1964.724 kb on + strand at 1964.724 kb on + strand at 1964.724 kb on + strand at 1964.724 kb on + strand at 1964.725 kb on - strand at 1964.725 kb on - strand at 1964.725 kb on - strand at 1964.725 kb on - strand at 1964.725 kb on - strand at 1964.783 kb on + strand at 1964.784 kb on - strand at 1964.784 kb on - strand at 1964.784 kb on - strand at 1964.784 kb on - strand at 1964.793 kb on + strand at 1964.929 kb on - strand, within RS_RS24630 at 1964.944 kb on - strand, within RS_RS24630 at 1965.245 kb on + strand, within RS_RS24630 at 1965.324 kb on + strand at 1965.325 kb on - strand at 1965.424 kb on + strand at 1965.425 kb on - strand at 1965.425 kb on - strand at 1965.425 kb on - strand at 1965.443 kb on + strand at 1965.444 kb on - strand at 1965.804 kb on + strand, within RS_RS24635 at 1965.804 kb on + strand, within RS_RS24635 at 1965.805 kb on - strand, within RS_RS24635 at 1965.808 kb on + strand, within RS_RS24635 at 1965.808 kb on + strand, within RS_RS24635 at 1965.808 kb on + strand, within RS_RS24635 at 1965.808 kb on + strand, within RS_RS24635 at 1965.809 kb on - strand, within RS_RS24635 at 1965.809 kb on - strand, within RS_RS24635 at 1965.809 kb on - strand, within RS_RS24635 at 1965.819 kb on + strand, within RS_RS24635 at 1965.915 kb on + strand at 1965.916 kb on - strand at 1965.916 kb on - strand at 1966.073 kb on + strand at 1966.073 kb on + strand at 1966.143 kb on - strand at 1966.151 kb on + strand at 1966.151 kb on + strand at 1966.151 kb on + strand at 1966.152 kb on - strand at 1966.152 kb on - strand at 1966.152 kb on - strand at 1966.152 kb on - strand at 1966.152 kb on - strand at 1966.153 kb on + strand at 1966.153 kb on + strand at 1966.401 kb on - strand, within RS_RS24640 at 1966.500 kb on - strand, within RS_RS24640 at 1966.500 kb on - strand, within RS_RS24640 at 1966.610 kb on + strand, within RS_RS24640 at 1966.611 kb on - strand, within RS_RS24640 at 1966.757 kb on + strand, within RS_RS24640 at 1966.757 kb on + strand, within RS_RS24640 at 1966.758 kb on - strand, within RS_RS24640 at 1966.758 kb on - strand, within RS_RS24640 at 1966.758 kb on - strand, within RS_RS24640 at 1966.758 kb on - strand, within RS_RS24640 at 1966.758 kb on - strand, within RS_RS24640
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 1,964,573 + RS_RS24625 0.67 -1.4 1,964,573 + RS_RS24625 0.67 +0.6 1,964,573 + RS_RS24625 0.67 -0.7 1,964,574 - RS_RS24625 0.67 +0.3 1,964,574 - RS_RS24625 0.67 -0.1 1,964,576 + RS_RS24625 0.67 +0.5 1,964,576 + RS_RS24625 0.67 +0.1 1,964,577 - RS_RS24625 0.68 -0.2 1,964,615 + RS_RS24625 0.76 -0.2 1,964,615 + RS_RS24625 0.76 +0.1 1,964,615 + RS_RS24625 0.76 -1.3 1,964,615 + RS_RS24625 0.76 +0.7 1,964,615 + RS_RS24625 0.76 -1.3 1,964,615 + RS_RS24625 0.76 +1.1 1,964,615 + RS_RS24625 0.76 +0.5 1,964,615 + RS_RS24625 0.76 -0.2 1,964,615 + RS_RS24625 0.76 -0.5 1,964,615 + RS_RS24625 0.76 +0.4 1,964,615 + RS_RS24625 0.76 +0.1 1,964,615 + RS_RS24625 0.76 -0.1 1,964,616 - RS_RS24625 0.76 +0.7 1,964,616 - RS_RS24625 0.76 -0.3 1,964,616 - RS_RS24625 0.76 -0.6 1,964,616 - RS_RS24625 0.76 -0.3 1,964,616 - RS_RS24625 0.76 +0.4 1,964,616 - RS_RS24625 0.76 +0.6 1,964,616 - RS_RS24625 0.76 +0.1 1,964,616 - RS_RS24625 0.76 -0.9 1,964,616 - RS_RS24625 0.76 -0.6 1,964,720 + -0.6 1,964,720 + -0.9 1,964,720 + -0.9 1,964,720 + -1.4 1,964,720 + -1.0 1,964,720 + +0.4 1,964,720 + +1.8 1,964,721 - +1.8 1,964,721 - -0.5 1,964,721 - -0.2 1,964,721 - -1.3 1,964,721 - +0.1 1,964,721 - -2.3 1,964,721 - +0.7 1,964,724 + -1.5 1,964,724 + +0.2 1,964,724 + -0.3 1,964,724 + -0.1 1,964,724 + -0.4 1,964,724 + +0.7 1,964,724 + -0.3 1,964,725 - -0.4 1,964,725 - +0.5 1,964,725 - -0.6 1,964,725 - +0.6 1,964,725 - +0.0 1,964,783 + -0.9 1,964,784 - +0.7 1,964,784 - +1.5 1,964,784 - +0.4 1,964,784 - -0.9 1,964,793 + -1.4 1,964,929 - RS_RS24630 0.11 +1.3 1,964,944 - RS_RS24630 0.14 -0.4 1,965,245 + RS_RS24630 0.80 +2.3 1,965,324 + -0.4 1,965,325 - -1.6 1,965,424 + -0.0 1,965,425 - -0.4 1,965,425 - -0.3 1,965,425 - +0.7 1,965,443 + -0.6 1,965,444 - -0.4 1,965,804 + RS_RS24635 0.70 -2.8 1,965,804 + RS_RS24635 0.70 -0.9 1,965,805 - RS_RS24635 0.70 +0.0 1,965,808 + RS_RS24635 0.71 +0.7 1,965,808 + RS_RS24635 0.71 +1.3 1,965,808 + RS_RS24635 0.71 -1.6 1,965,808 + RS_RS24635 0.71 +0.7 1,965,809 - RS_RS24635 0.71 +0.3 1,965,809 - RS_RS24635 0.71 +0.8 1,965,809 - RS_RS24635 0.71 -0.1 1,965,819 + RS_RS24635 0.73 +0.7 1,965,915 + +0.7 1,965,916 - +0.2 1,965,916 - -0.5 1,966,073 + +0.7 1,966,073 + -0.8 1,966,143 - -1.7 1,966,151 + +2.3 1,966,151 + -0.9 1,966,151 + +0.6 1,966,152 - +0.7 1,966,152 - -1.0 1,966,152 - +0.5 1,966,152 - -1.2 1,966,152 - -0.5 1,966,153 + +1.1 1,966,153 + -0.7 1,966,401 - RS_RS24640 0.19 -0.9 1,966,500 - RS_RS24640 0.28 +0.3 1,966,500 - RS_RS24640 0.28 +0.9 1,966,610 + RS_RS24640 0.37 -1.4 1,966,611 - RS_RS24640 0.37 +1.7 1,966,757 + RS_RS24640 0.50 +0.3 1,966,757 + RS_RS24640 0.50 +0.3 1,966,758 - RS_RS24640 0.50 -0.0 1,966,758 - RS_RS24640 0.50 -0.7 1,966,758 - RS_RS24640 0.50 -0.4 1,966,758 - RS_RS24640 0.50 -0.6 1,966,758 - RS_RS24640 0.50 -0.1
Or see this region's nucleotide sequence