Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22225

Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS22215 and RS_RS22220 are separated by 203 nucleotidesRS_RS22220 and RS_RS22225 are separated by 75 nucleotidesRS_RS22225 and RS_RS22230 are separated by 1 nucleotides RS_RS22215: RS_RS22215 - cold-shock protein, at 1,334,911 to 1,335,114 _RS22215 RS_RS22220: RS_RS22220 - cold-shock protein, at 1,335,318 to 1,335,524 _RS22220 RS_RS22225: RS_RS22225 - methylmalonate-semialdehyde dehydrogenase (CoA acylating), at 1,335,600 to 1,337,135 _RS22225 RS_RS22230: RS_RS22230 - aspartate aminotransferase family protein, at 1,337,137 to 1,338,474 _RS22230 Position (kb) 1335 1336 1337 1338Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1334.658 kb on + strandat 1334.659 kb on - strandat 1334.659 kb on - strandat 1334.659 kb on - strandat 1334.659 kb on - strandat 1334.811 kb on + strandat 1334.812 kb on + strandat 1334.812 kb on + strandat 1334.812 kb on + strandat 1334.812 kb on + strandat 1334.812 kb on + strandat 1334.812 kb on + strandat 1334.812 kb on + strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.813 kb on - strandat 1334.814 kb on + strandat 1334.814 kb on + strandat 1334.814 kb on + strandat 1334.814 kb on + strandat 1334.814 kb on + strandat 1334.814 kb on + strandat 1334.814 kb on + strandat 1334.814 kb on + strandat 1334.814 kb on + strandat 1334.814 kb on + strandat 1334.814 kb on + strandat 1334.815 kb on - strandat 1334.815 kb on - strandat 1334.916 kb on + strandat 1334.917 kb on - strandat 1334.923 kb on - strandat 1334.947 kb on - strand, within RS_RS22215at 1334.961 kb on + strand, within RS_RS22215at 1334.962 kb on - strand, within RS_RS22215at 1334.962 kb on - strand, within RS_RS22215at 1334.962 kb on - strand, within RS_RS22215at 1334.964 kb on + strand, within RS_RS22215at 1335.100 kb on - strandat 1335.242 kb on + strandat 1335.242 kb on + strandat 1335.242 kb on + strandat 1335.242 kb on + strandat 1335.243 kb on - strandat 1335.243 kb on - strandat 1335.243 kb on - strandat 1335.351 kb on + strand, within RS_RS22220at 1335.351 kb on + strand, within RS_RS22220at 1335.351 kb on + strand, within RS_RS22220at 1335.351 kb on + strand, within RS_RS22220at 1335.351 kb on + strand, within RS_RS22220at 1335.351 kb on + strand, within RS_RS22220at 1335.351 kb on + strand, within RS_RS22220at 1335.351 kb on + strand, within RS_RS22220at 1335.352 kb on - strand, within RS_RS22220at 1335.352 kb on - strand, within RS_RS22220at 1335.352 kb on - strand, within RS_RS22220at 1335.352 kb on - strand, within RS_RS22220at 1335.510 kb on - strandat 1335.673 kb on + strandat 1335.674 kb on - strandat 1335.674 kb on - strandat 1335.682 kb on + strandat 1335.682 kb on + strandat 1335.682 kb on + strandat 1335.683 kb on - strandat 1335.683 kb on - strandat 1335.706 kb on + strandat 1335.706 kb on + strandat 1335.850 kb on + strand, within RS_RS22225at 1335.850 kb on + strand, within RS_RS22225at 1335.850 kb on + strand, within RS_RS22225at 1335.851 kb on - strand, within RS_RS22225at 1335.851 kb on - strand, within RS_RS22225at 1335.851 kb on - strand, within RS_RS22225at 1335.851 kb on - strand, within RS_RS22225at 1335.871 kb on + strand, within RS_RS22225at 1335.871 kb on + strand, within RS_RS22225at 1335.871 kb on + strand, within RS_RS22225at 1335.958 kb on + strand, within RS_RS22225at 1335.958 kb on + strand, within RS_RS22225at 1336.090 kb on + strand, within RS_RS22225at 1336.091 kb on - strand, within RS_RS22225at 1336.091 kb on - strand, within RS_RS22225at 1336.091 kb on - strand, within RS_RS22225at 1336.274 kb on - strand, within RS_RS22225at 1336.274 kb on - strand, within RS_RS22225at 1336.393 kb on + strand, within RS_RS22225at 1336.393 kb on + strand, within RS_RS22225at 1336.393 kb on + strand, within RS_RS22225at 1336.393 kb on + strand, within RS_RS22225at 1336.393 kb on + strand, within RS_RS22225at 1336.393 kb on + strand, within RS_RS22225at 1336.394 kb on - strand, within RS_RS22225at 1336.394 kb on - strand, within RS_RS22225at 1336.394 kb on - strand, within RS_RS22225at 1336.399 kb on + strand, within RS_RS22225at 1336.399 kb on + strand, within RS_RS22225at 1336.399 kb on + strand, within RS_RS22225at 1336.400 kb on - strand, within RS_RS22225at 1336.400 kb on - strand, within RS_RS22225at 1336.400 kb on - strand, within RS_RS22225at 1336.400 kb on - strand, within RS_RS22225at 1336.400 kb on - strand, within RS_RS22225at 1336.400 kb on - strand, within RS_RS22225at 1336.400 kb on - strand, within RS_RS22225at 1336.724 kb on + strand, within RS_RS22225at 1336.725 kb on - strand, within RS_RS22225at 1337.074 kb on + strandat 1337.074 kb on + strandat 1337.074 kb on + strandat 1337.074 kb on + strandat 1337.075 kb on - strandat 1337.143 kb on + strandat 1337.143 kb on + strandat 1337.143 kb on + strandat 1337.144 kb on - strandat 1337.144 kb on - strandat 1337.161 kb on - strandat 1337.240 kb on + strandat 1337.241 kb on - strandat 1337.286 kb on - strand, within RS_RS22230at 1337.299 kb on + strand, within RS_RS22230at 1337.450 kb on + strand, within RS_RS22230at 1337.501 kb on + strand, within RS_RS22230at 1337.501 kb on + strand, within RS_RS22230at 1337.502 kb on - strand, within RS_RS22230at 1337.502 kb on - strand, within RS_RS22230at 1337.505 kb on + strand, within RS_RS22230at 1337.505 kb on + strand, within RS_RS22230at 1337.505 kb on + strand, within RS_RS22230at 1337.505 kb on + strand, within RS_RS22230at 1337.505 kb on + strand, within RS_RS22230at 1337.505 kb on + strand, within RS_RS22230at 1337.505 kb on + strand, within RS_RS22230at 1337.505 kb on + strand, within RS_RS22230at 1337.506 kb on - strand, within RS_RS22230at 1337.506 kb on - strand, within RS_RS22230at 1337.506 kb on - strand, within RS_RS22230at 1337.506 kb on - strand, within RS_RS22230at 1337.506 kb on - strand, within RS_RS22230at 1337.506 kb on - strand, within RS_RS22230at 1337.507 kb on + strand, within RS_RS22230at 1337.759 kb on + strand, within RS_RS22230at 1337.945 kb on - strand, within RS_RS22230at 1338.112 kb on - strand, within RS_RS22230

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
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1,334,658 + -0.1
1,334,659 - -0.1
1,334,659 - -1.5
1,334,659 - +1.1
1,334,659 - +0.9
1,334,811 + +0.5
1,334,812 + +0.0
1,334,812 + +0.2
1,334,812 + -0.6
1,334,812 + -0.1
1,334,812 + -1.0
1,334,812 + +0.5
1,334,812 + -1.4
1,334,813 - +0.4
1,334,813 - -0.5
1,334,813 - -0.1
1,334,813 - -1.0
1,334,813 - +0.9
1,334,813 - -0.7
1,334,813 - +1.4
1,334,813 - +0.1
1,334,813 - -0.4
1,334,813 - -0.5
1,334,813 - +0.0
1,334,813 - -0.1
1,334,814 + +0.3
1,334,814 + -0.1
1,334,814 + +0.2
1,334,814 + +0.4
1,334,814 + -0.3
1,334,814 + +0.3
1,334,814 + +0.9
1,334,814 + +1.5
1,334,814 + +0.2
1,334,814 + +0.9
1,334,814 + +0.4
1,334,815 - -3.1
1,334,815 - +1.1
1,334,916 + +0.9
1,334,917 - +0.8
1,334,923 - -0.1
1,334,947 - RS_RS22215 0.18 +1.0
1,334,961 + RS_RS22215 0.25 +0.4
1,334,962 - RS_RS22215 0.25 +1.7
1,334,962 - RS_RS22215 0.25 +0.2
1,334,962 - RS_RS22215 0.25 +1.1
1,334,964 + RS_RS22215 0.26 -0.1
1,335,100 - +1.0
1,335,242 + +0.6
1,335,242 + +0.2
1,335,242 + -1.8
1,335,242 + -0.1
1,335,243 - -0.8
1,335,243 - -0.2
1,335,243 - -1.2
1,335,351 + RS_RS22220 0.16 -0.0
1,335,351 + RS_RS22220 0.16 +1.2
1,335,351 + RS_RS22220 0.16 -0.3
1,335,351 + RS_RS22220 0.16 -0.0
1,335,351 + RS_RS22220 0.16 +0.5
1,335,351 + RS_RS22220 0.16 +0.0
1,335,351 + RS_RS22220 0.16 +0.1
1,335,351 + RS_RS22220 0.16 +2.4
1,335,352 - RS_RS22220 0.16 -0.1
1,335,352 - RS_RS22220 0.16 -0.4
1,335,352 - RS_RS22220 0.16 +0.0
1,335,352 - RS_RS22220 0.16 -1.0
1,335,510 - +0.4
1,335,673 + +0.2
1,335,674 - -2.0
1,335,674 - -1.9
1,335,682 + +0.1
1,335,682 + +1.6
1,335,682 + +0.8
1,335,683 - -0.0
1,335,683 - -0.1
1,335,706 + -0.1
1,335,706 + -1.9
1,335,850 + RS_RS22225 0.16 +0.4
1,335,850 + RS_RS22225 0.16 +1.1
1,335,850 + RS_RS22225 0.16 -0.1
1,335,851 - RS_RS22225 0.16 +0.5
1,335,851 - RS_RS22225 0.16 -0.1
1,335,851 - RS_RS22225 0.16 +1.1
1,335,851 - RS_RS22225 0.16 +0.3
1,335,871 + RS_RS22225 0.18 -0.1
1,335,871 + RS_RS22225 0.18 +0.6
1,335,871 + RS_RS22225 0.18 -0.0
1,335,958 + RS_RS22225 0.23 +0.3
1,335,958 + RS_RS22225 0.23 -0.5
1,336,090 + RS_RS22225 0.32 -0.6
1,336,091 - RS_RS22225 0.32 +1.5
1,336,091 - RS_RS22225 0.32 -0.8
1,336,091 - RS_RS22225 0.32 -0.7
1,336,274 - RS_RS22225 0.44 +1.0
1,336,274 - RS_RS22225 0.44 -0.6
1,336,393 + RS_RS22225 0.52 -0.6
1,336,393 + RS_RS22225 0.52 -1.2
1,336,393 + RS_RS22225 0.52 -0.2
1,336,393 + RS_RS22225 0.52 +1.3
1,336,393 + RS_RS22225 0.52 -1.1
1,336,393 + RS_RS22225 0.52 +0.6
1,336,394 - RS_RS22225 0.52 -0.9
1,336,394 - RS_RS22225 0.52 -0.1
1,336,394 - RS_RS22225 0.52 -0.0
1,336,399 + RS_RS22225 0.52 +0.2
1,336,399 + RS_RS22225 0.52 +0.4
1,336,399 + RS_RS22225 0.52 -0.6
1,336,400 - RS_RS22225 0.52 -0.0
1,336,400 - RS_RS22225 0.52 -0.9
1,336,400 - RS_RS22225 0.52 -0.2
1,336,400 - RS_RS22225 0.52 -1.3
1,336,400 - RS_RS22225 0.52 -1.0
1,336,400 - RS_RS22225 0.52 +0.2
1,336,400 - RS_RS22225 0.52 +0.3
1,336,724 + RS_RS22225 0.73 -0.3
1,336,725 - RS_RS22225 0.73 -0.8
1,337,074 + -2.2
1,337,074 + +1.0
1,337,074 + +0.4
1,337,074 + +0.4
1,337,075 - +0.5
1,337,143 + +0.1
1,337,143 + -1.0
1,337,143 + +1.4
1,337,144 - -0.9
1,337,144 - -0.5
1,337,161 - +0.4
1,337,240 + -0.7
1,337,241 - +1.5
1,337,286 - RS_RS22230 0.11 -0.2
1,337,299 + RS_RS22230 0.12 -0.5
1,337,450 + RS_RS22230 0.23 +0.3
1,337,501 + RS_RS22230 0.27 -0.4
1,337,501 + RS_RS22230 0.27 +0.4
1,337,502 - RS_RS22230 0.27 -1.2
1,337,502 - RS_RS22230 0.27 +1.5
1,337,505 + RS_RS22230 0.28 +0.9
1,337,505 + RS_RS22230 0.28 +0.8
1,337,505 + RS_RS22230 0.28 +0.8
1,337,505 + RS_RS22230 0.28 -0.3
1,337,505 + RS_RS22230 0.28 -0.2
1,337,505 + RS_RS22230 0.28 -0.2
1,337,505 + RS_RS22230 0.28 -1.0
1,337,505 + RS_RS22230 0.28 -1.2
1,337,506 - RS_RS22230 0.28 +0.4
1,337,506 - RS_RS22230 0.28 -0.3
1,337,506 - RS_RS22230 0.28 -0.5
1,337,506 - RS_RS22230 0.28 +0.4
1,337,506 - RS_RS22230 0.28 +0.0
1,337,506 - RS_RS22230 0.28 -0.6
1,337,507 + RS_RS22230 0.28 +2.7
1,337,759 + RS_RS22230 0.46 -1.1
1,337,945 - RS_RS22230 0.60 +0.4
1,338,112 - RS_RS22230 0.73 -0.4

Or see this region's nucleotide sequence