Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20440 and RS_RS20445 are separated by 536 nucleotides RS_RS20445 and RS_RS20450 are separated by 19 nucleotides
RS_RS20440: RS_RS20440 - LysR family transcriptional regulator, at 879,615 to 880,544
_RS20440
RS_RS20445: RS_RS20445 - VOC family protein, at 881,081 to 881,623
_RS20445
RS_RS20450: RS_RS20450 - Tryptophan 2,3-dioxygenase 2, at 881,643 to 882,752
_RS20450
Position (kb) 881
882 Strain fitness (log2 ratio) -1
0
1 at 880.131 kb on + strand, within RS_RS20440 at 880.132 kb on - strand, within RS_RS20440 at 880.332 kb on + strand, within RS_RS20440 at 880.333 kb on - strand, within RS_RS20440 at 880.611 kb on + strand at 880.612 kb on - strand at 880.896 kb on - strand at 881.008 kb on - strand at 881.008 kb on - strand at 881.008 kb on - strand at 881.144 kb on + strand, within RS_RS20445 at 881.144 kb on + strand, within RS_RS20445 at 881.255 kb on + strand, within RS_RS20445 at 881.255 kb on + strand, within RS_RS20445 at 881.255 kb on + strand, within RS_RS20445 at 881.255 kb on + strand, within RS_RS20445 at 881.255 kb on + strand, within RS_RS20445 at 881.256 kb on - strand, within RS_RS20445 at 881.256 kb on - strand, within RS_RS20445 at 881.442 kb on - strand, within RS_RS20445 at 881.534 kb on + strand, within RS_RS20445 at 881.658 kb on + strand at 881.659 kb on - strand at 881.769 kb on + strand, within RS_RS20450 at 881.803 kb on + strand, within RS_RS20450 at 881.803 kb on + strand, within RS_RS20450 at 881.803 kb on + strand, within RS_RS20450 at 881.804 kb on - strand, within RS_RS20450 at 881.804 kb on - strand, within RS_RS20450 at 882.171 kb on + strand, within RS_RS20450 at 882.171 kb on + strand, within RS_RS20450 at 882.172 kb on - strand, within RS_RS20450 at 882.243 kb on + strand, within RS_RS20450 at 882.616 kb on - strand, within RS_RS20450 at 882.616 kb on - strand, within RS_RS20450
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 880,131 + RS_RS20440 0.55 -0.9 880,132 - RS_RS20440 0.56 -0.1 880,332 + RS_RS20440 0.77 +0.1 880,333 - RS_RS20440 0.77 +0.0 880,611 + -0.6 880,612 - -0.0 880,896 - +0.5 881,008 - +0.4 881,008 - -1.2 881,008 - +0.4 881,144 + RS_RS20445 0.12 -0.3 881,144 + RS_RS20445 0.12 -0.6 881,255 + RS_RS20445 0.32 +1.2 881,255 + RS_RS20445 0.32 -0.6 881,255 + RS_RS20445 0.32 +0.2 881,255 + RS_RS20445 0.32 +0.4 881,255 + RS_RS20445 0.32 +0.1 881,256 - RS_RS20445 0.32 -0.6 881,256 - RS_RS20445 0.32 +0.8 881,442 - RS_RS20445 0.66 +0.5 881,534 + RS_RS20445 0.83 -1.1 881,658 + -0.6 881,659 - -0.6 881,769 + RS_RS20450 0.11 +0.5 881,803 + RS_RS20450 0.14 +0.0 881,803 + RS_RS20450 0.14 -0.6 881,803 + RS_RS20450 0.14 +0.8 881,804 - RS_RS20450 0.15 -0.0 881,804 - RS_RS20450 0.15 +0.3 882,171 + RS_RS20450 0.48 +0.2 882,171 + RS_RS20450 0.48 -0.3 882,172 - RS_RS20450 0.48 -0.6 882,243 + RS_RS20450 0.54 +0.5 882,616 - RS_RS20450 0.88 -0.3 882,616 - RS_RS20450 0.88 -0.0
Or see this region's nucleotide sequence