Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20100 and RS_RS20105 overlap by 4 nucleotides RS_RS20105 and RS_RS26195 are separated by 388 nucleotides RS_RS26195 and RS_RS20110 are separated by 51 nucleotides
RS_RS20100: RS_RS20100 - membrane protein, at 754,466 to 756,070
_RS20100
RS_RS20105: RS_RS20105 - cobalt-precorrin-7 (C(5))-methyltransferase, at 756,067 to 756,774
_RS20105
RS_RS26195: RS_RS26195 - hypothetical protein, at 757,163 to 757,370
_RS26195
RS_RS20110: RS_RS20110 - VWA domain-containing protein, at 757,422 to 759,335
_RS20110
Position (kb) 756
757 Strain fitness (log2 ratio) -2
-1
0
1
2 at 755.121 kb on + strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.122 kb on - strand, within RS_RS20100 at 755.247 kb on + strand, within RS_RS20100 at 755.248 kb on - strand, within RS_RS20100 at 755.403 kb on + strand, within RS_RS20100 at 755.403 kb on + strand, within RS_RS20100 at 755.403 kb on + strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.439 kb on + strand, within RS_RS20100 at 755.523 kb on + strand, within RS_RS20100 at 756.028 kb on - strand at 756.028 kb on - strand at 756.257 kb on + strand, within RS_RS20105 at 756.509 kb on + strand, within RS_RS20105 at 756.510 kb on - strand, within RS_RS20105 at 757.063 kb on + strand at 757.063 kb on + strand at 757.165 kb on - strand at 757.328 kb on + strand, within RS_RS26195 at 757.328 kb on + strand, within RS_RS26195 at 757.328 kb on + strand, within RS_RS26195 at 757.540 kb on + strand at 757.541 kb on - strand at 757.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 755,121 + RS_RS20100 0.41 +0.3 755,121 + RS_RS20100 0.41 -0.3 755,121 + RS_RS20100 0.41 -0.8 755,121 + RS_RS20100 0.41 -0.6 755,122 - RS_RS20100 0.41 +2.0 755,247 + RS_RS20100 0.49 -0.6 755,248 - RS_RS20100 0.49 +0.0 755,403 + RS_RS20100 0.58 -1.4 755,403 + RS_RS20100 0.58 -0.2 755,403 + RS_RS20100 0.58 -1.0 755,404 - RS_RS20100 0.58 +2.0 755,404 - RS_RS20100 0.58 -1.0 755,404 - RS_RS20100 0.58 +0.5 755,404 - RS_RS20100 0.58 -0.2 755,404 - RS_RS20100 0.58 -0.5 755,404 - RS_RS20100 0.58 +0.5 755,439 + RS_RS20100 0.61 -1.5 755,523 + RS_RS20100 0.66 -0.5 756,028 - -1.9 756,028 - -2.3 756,257 + RS_RS20105 0.27 -0.4 756,509 + RS_RS20105 0.62 -0.7 756,510 - RS_RS20105 0.63 +2.3 757,063 + +0.1 757,063 + +1.5 757,165 - +0.5 757,328 + RS_RS26195 0.79 +0.7 757,328 + RS_RS26195 0.79 +0.2 757,328 + RS_RS26195 0.79 -1.3 757,540 + +0.5 757,541 - +0.5 757,541 - -0.7
Or see this region's nucleotide sequence