Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS08590 and RS_RS08595 are separated by 68 nucleotides RS_RS08595 and RS_RS08600 overlap by 1 nucleotides RS_RS08600 and RS_RS08605 are separated by 2 nucleotides RS_RS08605 and RS_RS08610 overlap by 1 nucleotides RS_RS08610 and RS_RS08615 are separated by 263 nucleotides
RS_RS08590: RS_RS08590 - hypothetical protein, at 1,817,662 to 1,818,318
_RS08590
RS_RS08595: RS_RS08595 - lysozyme, at 1,818,387 to 1,818,878
_RS08595
RS_RS08600: RS_RS08600 - hypothetical protein, at 1,818,878 to 1,819,186
_RS08600
RS_RS08605: RS_RS08605 - hypothetical protein, at 1,819,189 to 1,819,464
_RS08605
RS_RS08610: RS_RS08610 - lysis protein, at 1,819,464 to 1,820,009
_RS08610
RS_RS08615: RS_RS08615 - IS5 family transposase ISRso18, at 1,820,273 to 1,821,238
_RS08615
Position (kb) 1819
1820 Strain fitness (log2 ratio) -2
-1
0
1 at 1818.305 kb on + strand at 1818.316 kb on + strand at 1818.317 kb on - strand at 1818.393 kb on + strand at 1818.393 kb on + strand at 1818.538 kb on - strand, within RS_RS08595 at 1818.582 kb on - strand, within RS_RS08595 at 1818.607 kb on - strand, within RS_RS08595 at 1818.801 kb on + strand, within RS_RS08595 at 1818.844 kb on - strand at 1819.064 kb on - strand, within RS_RS08600 at 1819.344 kb on + strand, within RS_RS08605 at 1819.344 kb on + strand, within RS_RS08605 at 1819.345 kb on - strand, within RS_RS08605 at 1819.379 kb on + strand, within RS_RS08605 at 1819.379 kb on + strand, within RS_RS08605 at 1819.379 kb on + strand, within RS_RS08605 at 1819.380 kb on - strand, within RS_RS08605 at 1819.380 kb on - strand, within RS_RS08605 at 1819.380 kb on - strand, within RS_RS08605 at 1819.708 kb on - strand, within RS_RS08610 at 1819.708 kb on - strand, within RS_RS08610 at 1819.799 kb on + strand, within RS_RS08610 at 1819.985 kb on + strand at 1819.985 kb on + strand at 1819.986 kb on - strand at 1820.052 kb on - strand at 1820.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 1,818,305 + -0.6 1,818,316 + +0.4 1,818,317 - -0.8 1,818,393 + +0.4 1,818,393 + -1.0 1,818,538 - RS_RS08595 0.31 -1.2 1,818,582 - RS_RS08595 0.40 -0.1 1,818,607 - RS_RS08595 0.45 -0.4 1,818,801 + RS_RS08595 0.84 +0.3 1,818,844 - +0.2 1,819,064 - RS_RS08600 0.60 -0.5 1,819,344 + RS_RS08605 0.56 -0.6 1,819,344 + RS_RS08605 0.56 -2.4 1,819,345 - RS_RS08605 0.57 -0.0 1,819,379 + RS_RS08605 0.69 +1.0 1,819,379 + RS_RS08605 0.69 +0.1 1,819,379 + RS_RS08605 0.69 -0.4 1,819,380 - RS_RS08605 0.69 +0.3 1,819,380 - RS_RS08605 0.69 +0.5 1,819,380 - RS_RS08605 0.69 +0.4 1,819,708 - RS_RS08610 0.45 -0.6 1,819,708 - RS_RS08610 0.45 +0.4 1,819,799 + RS_RS08610 0.61 -0.4 1,819,985 + -0.2 1,819,985 + +0.4 1,819,986 - -0.0 1,820,052 - +0.1 1,820,202 - +0.8
Or see this region's nucleotide sequence