Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS08390 and RS_RS08395 overlap by 4 nucleotides RS_RS08395 and RS_RS08400 are separated by 9 nucleotides RS_RS08400 and RS_RS08405 are separated by 154 nucleotides RS_RS08405 and RS_RS08410 overlap by 4 nucleotides
RS_RS08390: RS_RS08390 - hypothetical protein, at 1,789,310 to 1,789,546
_RS08390
RS_RS08395: RS_RS08395 - hypothetical protein, at 1,789,543 to 1,789,974
_RS08395
RS_RS08400: RS_RS08400 - hypothetical protein, at 1,789,984 to 1,790,199
_RS08400
RS_RS08405: RS_RS08405 - hypothetical protein, at 1,790,354 to 1,790,791
_RS08405
RS_RS08410: RS_RS08410 - hypothetical protein, at 1,790,788 to 1,791,162
_RS08410
Position (kb) 1790
1791 Strain fitness (log2 ratio) -1
0
1
2 at 1789.446 kb on + strand, within RS_RS08390 at 1789.446 kb on + strand, within RS_RS08390 at 1789.598 kb on + strand, within RS_RS08395 at 1789.598 kb on + strand, within RS_RS08395 at 1789.619 kb on + strand, within RS_RS08395 at 1789.619 kb on + strand, within RS_RS08395 at 1790.357 kb on + strand at 1790.424 kb on + strand, within RS_RS08405 at 1790.424 kb on + strand, within RS_RS08405 at 1790.424 kb on + strand, within RS_RS08405 at 1790.426 kb on + strand, within RS_RS08405 at 1790.426 kb on + strand, within RS_RS08405 at 1790.611 kb on - strand, within RS_RS08405 at 1790.897 kb on + strand, within RS_RS08410 at 1791.105 kb on + strand, within RS_RS08410 at 1791.106 kb on - strand, within RS_RS08410 at 1791.250 kb on + strand at 1791.250 kb on + strand at 1791.251 kb on - strand at 1791.251 kb on - strand at 1791.251 kb on - strand at 1791.273 kb on + strand at 1791.273 kb on + strand at 1791.274 kb on - strand at 1791.274 kb on - strand at 1791.277 kb on + strand at 1791.277 kb on + strand at 1791.277 kb on + strand at 1791.420 kb on + strand at 1791.420 kb on + strand at 1791.421 kb on - strand at 1791.426 kb on + strand at 1791.426 kb on + strand at 1791.426 kb on + strand at 1791.426 kb on + strand at 1791.426 kb on + strand at 1791.427 kb on - strand at 1791.646 kb on + strand at 1791.647 kb on - strand at 1791.647 kb on - strand at 1791.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 1,789,446 + RS_RS08390 0.57 -0.6 1,789,446 + RS_RS08390 0.57 -0.3 1,789,598 + RS_RS08395 0.13 -0.5 1,789,598 + RS_RS08395 0.13 -0.6 1,789,619 + RS_RS08395 0.18 +0.4 1,789,619 + RS_RS08395 0.18 +0.2 1,790,357 + -0.0 1,790,424 + RS_RS08405 0.16 -0.0 1,790,424 + RS_RS08405 0.16 -1.2 1,790,424 + RS_RS08405 0.16 +1.4 1,790,426 + RS_RS08405 0.16 +1.8 1,790,426 + RS_RS08405 0.16 +1.6 1,790,611 - RS_RS08405 0.59 +0.4 1,790,897 + RS_RS08410 0.29 +0.9 1,791,105 + RS_RS08410 0.85 +0.1 1,791,106 - RS_RS08410 0.85 +0.4 1,791,250 + -0.4 1,791,250 + +1.4 1,791,251 - +0.0 1,791,251 - -0.1 1,791,251 - +2.5 1,791,273 + -0.3 1,791,273 + -0.4 1,791,274 - +2.4 1,791,274 - +0.4 1,791,277 + +0.7 1,791,277 + +0.2 1,791,277 + -0.1 1,791,420 + +0.4 1,791,420 + +0.4 1,791,421 - +0.4 1,791,426 + +1.1 1,791,426 + +0.4 1,791,426 + +0.6 1,791,426 + +0.4 1,791,426 + +0.4 1,791,427 - +1.1 1,791,646 + +0.6 1,791,647 - +0.4 1,791,647 - -0.5 1,791,785 + -0.0
Or see this region's nucleotide sequence