Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03100 and RS_RS03105 are separated by 402 nucleotides RS_RS03105 and RS_RS03110 are separated by 21 nucleotides RS_RS03110 and RS_RS03115 are separated by 64 nucleotides
RS_RS03100: RS_RS03100 - recombination-associated protein RdgC, at 664,810 to 665,733
_RS03100
RS_RS03105: RS_RS03105 - cytochrome b/b6 domain-containing protein, at 666,136 to 666,774
_RS03105
RS_RS03110: RS_RS03110 - hypothetical protein, at 666,796 to 667,569
_RS03110
RS_RS03115: RS_RS03115 - pentapeptide MXKDX repeat protein, at 667,634 to 667,897
_RS03115
Position (kb) 666
667 Strain fitness (log2 ratio) -1
0
1
2 at 665.425 kb on + strand, within RS_RS03100 at 665.886 kb on + strand at 665.887 kb on - strand at 665.887 kb on - strand at 665.932 kb on - strand at 666.003 kb on - strand at 666.003 kb on - strand at 666.094 kb on + strand at 666.094 kb on + strand at 666.276 kb on + strand, within RS_RS03105 at 666.280 kb on + strand, within RS_RS03105 at 666.280 kb on + strand, within RS_RS03105 at 666.280 kb on + strand, within RS_RS03105 at 666.281 kb on - strand, within RS_RS03105 at 666.281 kb on - strand, within RS_RS03105 at 666.281 kb on - strand, within RS_RS03105 at 666.281 kb on - strand, within RS_RS03105 at 666.281 kb on - strand, within RS_RS03105 at 666.403 kb on + strand, within RS_RS03105 at 666.554 kb on - strand, within RS_RS03105 at 666.731 kb on + strand at 666.782 kb on + strand at 667.042 kb on + strand, within RS_RS03110 at 667.084 kb on + strand, within RS_RS03110 at 667.084 kb on + strand, within RS_RS03110 at 667.085 kb on - strand, within RS_RS03110 at 667.085 kb on - strand, within RS_RS03110 at 667.087 kb on + strand, within RS_RS03110 at 667.186 kb on + strand, within RS_RS03110 at 667.186 kb on + strand, within RS_RS03110 at 667.186 kb on + strand, within RS_RS03110 at 667.187 kb on - strand, within RS_RS03110 at 667.187 kb on - strand, within RS_RS03110 at 667.303 kb on - strand, within RS_RS03110 at 667.315 kb on + strand, within RS_RS03110 at 667.316 kb on - strand, within RS_RS03110 at 667.342 kb on + strand, within RS_RS03110 at 667.345 kb on + strand, within RS_RS03110 at 667.346 kb on - strand, within RS_RS03110 at 667.402 kb on + strand, within RS_RS03110 at 667.403 kb on - strand, within RS_RS03110 at 667.403 kb on - strand, within RS_RS03110 at 667.403 kb on - strand, within RS_RS03110 at 667.403 kb on - strand, within RS_RS03110 at 667.403 kb on - strand, within RS_RS03110 at 667.429 kb on + strand, within RS_RS03110 at 667.429 kb on + strand, within RS_RS03110 at 667.458 kb on + strand, within RS_RS03110 at 667.458 kb on + strand, within RS_RS03110 at 667.459 kb on - strand, within RS_RS03110 at 667.459 kb on - strand, within RS_RS03110 at 667.529 kb on - strand at 667.546 kb on + strand at 667.546 kb on + strand at 667.547 kb on - strand at 667.581 kb on + strand at 667.582 kb on - strand at 667.614 kb on - strand at 667.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 665,425 + RS_RS03100 0.67 -1.1 665,886 + -0.4 665,887 - +2.1 665,887 - +1.5 665,932 - +0.1 666,003 - -0.7 666,003 - +0.1 666,094 + -0.6 666,094 + +2.4 666,276 + RS_RS03105 0.22 -1.4 666,280 + RS_RS03105 0.23 -0.1 666,280 + RS_RS03105 0.23 -0.7 666,280 + RS_RS03105 0.23 -0.1 666,281 - RS_RS03105 0.23 -1.6 666,281 - RS_RS03105 0.23 -0.1 666,281 - RS_RS03105 0.23 -0.7 666,281 - RS_RS03105 0.23 +0.7 666,281 - RS_RS03105 0.23 +0.3 666,403 + RS_RS03105 0.42 +0.1 666,554 - RS_RS03105 0.65 +0.7 666,731 + -0.3 666,782 + -0.5 667,042 + RS_RS03110 0.32 -0.3 667,084 + RS_RS03110 0.37 +0.3 667,084 + RS_RS03110 0.37 +0.9 667,085 - RS_RS03110 0.37 +0.2 667,085 - RS_RS03110 0.37 +0.4 667,087 + RS_RS03110 0.38 +0.4 667,186 + RS_RS03110 0.50 +0.5 667,186 + RS_RS03110 0.50 +2.4 667,186 + RS_RS03110 0.50 -1.5 667,187 - RS_RS03110 0.51 +0.1 667,187 - RS_RS03110 0.51 -1.4 667,303 - RS_RS03110 0.66 +0.4 667,315 + RS_RS03110 0.67 +0.4 667,316 - RS_RS03110 0.67 -1.6 667,342 + RS_RS03110 0.71 -0.0 667,345 + RS_RS03110 0.71 +0.7 667,346 - RS_RS03110 0.71 -0.4 667,402 + RS_RS03110 0.78 -0.5 667,403 - RS_RS03110 0.78 -0.2 667,403 - RS_RS03110 0.78 +0.6 667,403 - RS_RS03110 0.78 -0.9 667,403 - RS_RS03110 0.78 +0.1 667,403 - RS_RS03110 0.78 +1.5 667,429 + RS_RS03110 0.82 -0.3 667,429 + RS_RS03110 0.82 -0.1 667,458 + RS_RS03110 0.86 -0.7 667,458 + RS_RS03110 0.86 -0.7 667,459 - RS_RS03110 0.86 +0.7 667,459 - RS_RS03110 0.86 +0.0 667,529 - +0.6 667,546 + -0.3 667,546 + -0.5 667,547 - -0.0 667,581 + +0.7 667,582 - -0.6 667,614 - -0.1 667,614 - +0.5
Or see this region's nucleotide sequence