Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03100

Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03095 and RS_RS03100 are separated by 529 nucleotidesRS_RS03100 and RS_RS03105 are separated by 402 nucleotides RS_RS03095: RS_RS03095 - hypothetical protein, at 663,924 to 664,280 _RS03095 RS_RS03100: RS_RS03100 - recombination-associated protein RdgC, at 664,810 to 665,733 _RS03100 RS_RS03105: RS_RS03105 - cytochrome b/b6 domain-containing protein, at 666,136 to 666,774 _RS03105 Position (kb) 664 665 666Strain fitness (log2 ratio) -1 0 1 2at 663.926 kb on - strandat 663.941 kb on - strandat 663.953 kb on - strandat 664.099 kb on + strand, within RS_RS03095at 664.099 kb on + strand, within RS_RS03095at 664.262 kb on + strandat 664.399 kb on - strandat 664.408 kb on + strandat 664.453 kb on - strandat 664.480 kb on + strandat 664.480 kb on + strandat 664.614 kb on - strandat 664.619 kb on + strandat 664.619 kb on + strandat 664.620 kb on - strandat 664.620 kb on - strandat 664.803 kb on + strandat 665.425 kb on + strand, within RS_RS03100at 665.886 kb on + strandat 665.887 kb on - strandat 665.887 kb on - strandat 665.932 kb on - strandat 666.003 kb on - strandat 666.003 kb on - strandat 666.094 kb on + strandat 666.094 kb on + strandat 666.276 kb on + strand, within RS_RS03105at 666.280 kb on + strand, within RS_RS03105at 666.280 kb on + strand, within RS_RS03105at 666.280 kb on + strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.281 kb on - strand, within RS_RS03105at 666.403 kb on + strand, within RS_RS03105at 666.554 kb on - strand, within RS_RS03105at 666.731 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
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663,926 - -0.0
663,941 - +0.5
663,953 - -0.1
664,099 + RS_RS03095 0.49 -0.2
664,099 + RS_RS03095 0.49 -1.1
664,262 + -0.5
664,399 - -1.1
664,408 + +1.1
664,453 - +0.4
664,480 + -0.3
664,480 + +1.0
664,614 - -0.5
664,619 + -1.7
664,619 + +0.4
664,620 - -0.1
664,620 - +0.7
664,803 + +0.1
665,425 + RS_RS03100 0.67 -1.1
665,886 + -0.4
665,887 - +2.1
665,887 - +1.5
665,932 - +0.1
666,003 - -0.7
666,003 - +0.1
666,094 + -0.6
666,094 + +2.4
666,276 + RS_RS03105 0.22 -1.4
666,280 + RS_RS03105 0.23 -0.1
666,280 + RS_RS03105 0.23 -0.7
666,280 + RS_RS03105 0.23 -0.1
666,281 - RS_RS03105 0.23 -1.6
666,281 - RS_RS03105 0.23 -0.1
666,281 - RS_RS03105 0.23 -0.7
666,281 - RS_RS03105 0.23 +0.7
666,281 - RS_RS03105 0.23 +0.3
666,403 + RS_RS03105 0.42 +0.1
666,554 - RS_RS03105 0.65 +0.7
666,731 + -0.3

Or see this region's nucleotide sequence