Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00120 and RS_RS00125 are separated by 165 nucleotides RS_RS00125 and RS_RS00130 are separated by 226 nucleotides RS_RS00130 and RS_RS00135 overlap by 4 nucleotides
RS_RS00120: RS_RS00120 - sel1 repeat family protein, at 28,773 to 29,531
_RS00120
RS_RS00125: RS_RS00125 - hypothetical protein, at 29,697 to 30,218
_RS00125
RS_RS00130: RS_RS00130 - methionine biosynthesis protein MetW, at 30,445 to 31,092
_RS00130
RS_RS00135: RS_RS00135 - homoserine O-acetyltransferase, at 31,089 to 32,300
_RS00135
Position (kb) 30
31
32 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 29.744 kb on + strand at 29.811 kb on - strand, within RS_RS00125 at 29.869 kb on + strand, within RS_RS00125 at 29.870 kb on - strand, within RS_RS00125 at 29.870 kb on - strand, within RS_RS00125 at 29.870 kb on - strand, within RS_RS00125 at 29.870 kb on - strand, within RS_RS00125 at 29.966 kb on - strand, within RS_RS00125 at 29.981 kb on - strand, within RS_RS00125 at 30.137 kb on + strand, within RS_RS00125 at 30.219 kb on + strand at 30.219 kb on + strand at 30.220 kb on - strand at 30.265 kb on + strand at 30.266 kb on - strand at 30.275 kb on + strand at 30.275 kb on + strand at 30.375 kb on - strand at 30.378 kb on + strand at 30.379 kb on - strand at 30.396 kb on - strand at 30.611 kb on + strand, within RS_RS00130 at 30.620 kb on + strand, within RS_RS00130 at 30.620 kb on + strand, within RS_RS00130 at 30.620 kb on + strand, within RS_RS00130 at 30.621 kb on - strand, within RS_RS00130 at 30.681 kb on - strand, within RS_RS00130 at 30.790 kb on - strand, within RS_RS00130 at 30.903 kb on - strand, within RS_RS00130 at 30.932 kb on - strand, within RS_RS00130 at 31.120 kb on + strand at 31.121 kb on - strand at 31.124 kb on - strand at 31.201 kb on + strand at 31.202 kb on - strand at 31.297 kb on + strand, within RS_RS00135 at 31.297 kb on + strand, within RS_RS00135 at 31.297 kb on - strand, within RS_RS00135 at 31.298 kb on - strand, within RS_RS00135 at 31.298 kb on - strand, within RS_RS00135 at 31.298 kb on - strand, within RS_RS00135 at 31.342 kb on + strand, within RS_RS00135 at 31.342 kb on + strand, within RS_RS00135 at 31.364 kb on - strand, within RS_RS00135 at 31.364 kb on - strand, within RS_RS00135 at 31.364 kb on - strand, within RS_RS00135 at 31.390 kb on + strand, within RS_RS00135 at 31.390 kb on + strand, within RS_RS00135 at 31.391 kb on - strand, within RS_RS00135 at 31.391 kb on - strand, within RS_RS00135 at 31.391 kb on - strand, within RS_RS00135 at 31.408 kb on + strand, within RS_RS00135 at 31.408 kb on + strand, within RS_RS00135 at 31.442 kb on - strand, within RS_RS00135 at 31.442 kb on - strand, within RS_RS00135 at 31.537 kb on + strand, within RS_RS00135 at 31.538 kb on - strand, within RS_RS00135 at 31.538 kb on - strand, within RS_RS00135 at 31.538 kb on - strand, within RS_RS00135 at 31.600 kb on + strand, within RS_RS00135 at 31.600 kb on + strand, within RS_RS00135 at 31.600 kb on + strand, within RS_RS00135 at 31.601 kb on - strand, within RS_RS00135 at 31.601 kb on - strand, within RS_RS00135 at 31.604 kb on - strand, within RS_RS00135 at 31.604 kb on - strand, within RS_RS00135 at 31.729 kb on + strand, within RS_RS00135 at 31.730 kb on - strand, within RS_RS00135 at 31.730 kb on - strand, within RS_RS00135 at 31.780 kb on - strand, within RS_RS00135 at 31.873 kb on + strand, within RS_RS00135
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 29,744 + +0.4 29,811 - RS_RS00125 0.22 -0.2 29,869 + RS_RS00125 0.33 +0.4 29,870 - RS_RS00125 0.33 +0.2 29,870 - RS_RS00125 0.33 +0.3 29,870 - RS_RS00125 0.33 +0.9 29,870 - RS_RS00125 0.33 +2.9 29,966 - RS_RS00125 0.52 +2.5 29,981 - RS_RS00125 0.54 +0.3 30,137 + RS_RS00125 0.84 +0.8 30,219 + +0.7 30,219 + +0.7 30,220 - -0.5 30,265 + -0.2 30,266 - -0.2 30,275 + +0.1 30,275 + +3.3 30,375 - -0.9 30,378 + -0.1 30,379 - -0.2 30,396 - -1.4 30,611 + RS_RS00130 0.26 +0.6 30,620 + RS_RS00130 0.27 -3.3 30,620 + RS_RS00130 0.27 -1.2 30,620 + RS_RS00130 0.27 -0.3 30,621 - RS_RS00130 0.27 -0.4 30,681 - RS_RS00130 0.36 -0.2 30,790 - RS_RS00130 0.53 +1.0 30,903 - RS_RS00130 0.71 -2.0 30,932 - RS_RS00130 0.75 -1.0 31,120 + -3.1 31,121 - -2.7 31,124 - -2.2 31,201 + -1.0 31,202 - -3.2 31,297 + RS_RS00135 0.17 -3.6 31,297 + RS_RS00135 0.17 -2.9 31,297 - RS_RS00135 0.17 -2.7 31,298 - RS_RS00135 0.17 -0.0 31,298 - RS_RS00135 0.17 -3.0 31,298 - RS_RS00135 0.17 -1.6 31,342 + RS_RS00135 0.21 -0.6 31,342 + RS_RS00135 0.21 -1.4 31,364 - RS_RS00135 0.23 +1.0 31,364 - RS_RS00135 0.23 -4.8 31,364 - RS_RS00135 0.23 -3.7 31,390 + RS_RS00135 0.25 -6.5 31,390 + RS_RS00135 0.25 -3.6 31,391 - RS_RS00135 0.25 -3.3 31,391 - RS_RS00135 0.25 -4.6 31,391 - RS_RS00135 0.25 -3.7 31,408 + RS_RS00135 0.26 -4.0 31,408 + RS_RS00135 0.26 -5.5 31,442 - RS_RS00135 0.29 -3.6 31,442 - RS_RS00135 0.29 -2.6 31,537 + RS_RS00135 0.37 -2.5 31,538 - RS_RS00135 0.37 -2.0 31,538 - RS_RS00135 0.37 -0.0 31,538 - RS_RS00135 0.37 -3.9 31,600 + RS_RS00135 0.42 -3.9 31,600 + RS_RS00135 0.42 -2.5 31,600 + RS_RS00135 0.42 -3.5 31,601 - RS_RS00135 0.42 -3.4 31,601 - RS_RS00135 0.42 -3.0 31,604 - RS_RS00135 0.42 -2.0 31,604 - RS_RS00135 0.42 -1.0 31,729 + RS_RS00135 0.53 -3.3 31,730 - RS_RS00135 0.53 -5.2 31,730 - RS_RS00135 0.53 -0.0 31,780 - RS_RS00135 0.57 -2.2 31,873 + RS_RS00135 0.65 -2.0
Or see this region's nucleotide sequence