Experiment: Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0495 and BT0496 are separated by 42 nucleotides BT0496 and BT0497 are separated by 17 nucleotides BT0497 and BT0498 are separated by 16 nucleotides
BT0495: BT0495 - cobalamin biosynthesis protein (NCBI ptt file), at 611,405 to 613,201
BT0495
BT0496: BT0496 - TonB-dependent receptor (NCBI ptt file), at 613,244 to 615,391
BT0496
BT0497: BT0497 - conserved hypothetical protein (NCBI ptt file), at 615,409 to 616,071
BT0497
BT0498: BT0498 - hypothetical protein (NCBI ptt file), at 616,088 to 616,972
BT0498
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 612.247 kb on - strand, within BT0495 at 612.314 kb on - strand, within BT0495 at 612.424 kb on + strand, within BT0495 at 612.607 kb on + strand, within BT0495 at 612.777 kb on + strand, within BT0495 at 612.778 kb on - strand, within BT0495 at 612.845 kb on + strand, within BT0495 at 612.897 kb on + strand, within BT0495 at 612.897 kb on + strand, within BT0495 at 612.898 kb on - strand, within BT0495 at 613.208 kb on + strand at 613.222 kb on + strand at 613.223 kb on - strand at 613.223 kb on - strand at 613.233 kb on - strand at 613.265 kb on + strand at 613.278 kb on - strand at 613.341 kb on + strand at 613.387 kb on + strand at 613.420 kb on + strand at 613.479 kb on + strand, within BT0496 at 613.633 kb on + strand, within BT0496 at 613.633 kb on + strand, within BT0496 at 613.633 kb on + strand, within BT0496 at 613.635 kb on + strand, within BT0496 at 613.636 kb on - strand, within BT0496 at 613.636 kb on - strand, within BT0496 at 613.636 kb on - strand, within BT0496 at 613.728 kb on + strand, within BT0496 at 613.762 kb on + strand, within BT0496 at 613.798 kb on + strand, within BT0496 at 613.811 kb on - strand, within BT0496 at 613.897 kb on + strand, within BT0496 at 613.907 kb on - strand, within BT0496 at 613.920 kb on + strand, within BT0496 at 613.920 kb on + strand, within BT0496 at 613.920 kb on + strand, within BT0496 at 613.959 kb on + strand, within BT0496 at 613.970 kb on + strand, within BT0496 at 613.992 kb on + strand, within BT0496 at 613.993 kb on - strand, within BT0496 at 614.025 kb on - strand, within BT0496 at 614.072 kb on - strand, within BT0496 at 614.227 kb on - strand, within BT0496 at 614.250 kb on - strand, within BT0496 at 614.254 kb on + strand, within BT0496 at 614.307 kb on + strand, within BT0496 at 614.347 kb on + strand, within BT0496 at 614.358 kb on + strand, within BT0496 at 614.524 kb on + strand, within BT0496 at 614.554 kb on - strand, within BT0496 at 614.561 kb on + strand, within BT0496 at 614.670 kb on - strand, within BT0496 at 614.711 kb on + strand, within BT0496 at 614.778 kb on - strand, within BT0496 at 614.885 kb on - strand, within BT0496 at 614.908 kb on + strand, within BT0496 at 614.908 kb on + strand, within BT0496 at 615.157 kb on - strand, within BT0496 at 615.173 kb on - strand, within BT0496 at 615.173 kb on - strand, within BT0496 at 615.175 kb on - strand, within BT0496 at 615.197 kb on + strand at 615.202 kb on + strand at 615.205 kb on - strand at 615.205 kb on - strand at 615.411 kb on - strand at 615.483 kb on + strand, within BT0497 at 615.486 kb on - strand, within BT0497 at 615.510 kb on - strand, within BT0497 at 615.513 kb on + strand, within BT0497 at 615.513 kb on + strand, within BT0497 at 615.536 kb on + strand, within BT0497 at 615.562 kb on - strand, within BT0497 at 615.753 kb on + strand, within BT0497 at 615.756 kb on - strand, within BT0497 at 615.893 kb on + strand, within BT0497 at 615.903 kb on + strand, within BT0497 at 615.909 kb on - strand, within BT0497 at 616.017 kb on + strand at 616.124 kb on + strand at 616.141 kb on + strand at 616.178 kb on - strand, within BT0498 at 616.319 kb on - strand, within BT0498 at 616.343 kb on - strand, within BT0498
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM remove 612,247 - BT0495 0.47 -0.9 612,314 - BT0495 0.51 -2.1 612,424 + BT0495 0.57 -3.1 612,607 + BT0495 0.67 +0.1 612,777 + BT0495 0.76 -1.7 612,778 - BT0495 0.76 -2.7 612,845 + BT0495 0.80 -0.5 612,897 + BT0495 0.83 -1.9 612,897 + BT0495 0.83 +0.1 612,898 - BT0495 0.83 -0.6 613,208 + -0.6 613,222 + -0.9 613,223 - -2.2 613,223 - -0.4 613,233 - +0.1 613,265 + +1.1 613,278 - +0.1 613,341 + -0.6 613,387 + -0.9 613,420 + -3.5 613,479 + BT0496 0.11 -3.1 613,633 + BT0496 0.18 -0.9 613,633 + BT0496 0.18 +2.2 613,633 + BT0496 0.18 +1.4 613,635 + BT0496 0.18 +0.1 613,636 - BT0496 0.18 -1.9 613,636 - BT0496 0.18 -0.9 613,636 - BT0496 0.18 -2.3 613,728 + BT0496 0.23 -2.6 613,762 + BT0496 0.24 -0.9 613,798 + BT0496 0.26 -1.1 613,811 - BT0496 0.26 -1.9 613,897 + BT0496 0.30 +0.1 613,907 - BT0496 0.31 -2.4 613,920 + BT0496 0.31 -0.5 613,920 + BT0496 0.31 -1.9 613,920 + BT0496 0.31 -0.5 613,959 + BT0496 0.33 -0.9 613,970 + BT0496 0.34 +0.1 613,992 + BT0496 0.35 -1.3 613,993 - BT0496 0.35 -3.3 614,025 - BT0496 0.36 -0.6 614,072 - BT0496 0.39 +1.1 614,227 - BT0496 0.46 -2.7 614,250 - BT0496 0.47 -1.5 614,254 + BT0496 0.47 -0.8 614,307 + BT0496 0.49 -1.9 614,347 + BT0496 0.51 -3.1 614,358 + BT0496 0.52 -2.5 614,524 + BT0496 0.60 +1.2 614,554 - BT0496 0.61 -2.1 614,561 + BT0496 0.61 -2.1 614,670 - BT0496 0.66 -0.9 614,711 + BT0496 0.68 +0.1 614,778 - BT0496 0.71 -0.7 614,885 - BT0496 0.76 -2.3 614,908 + BT0496 0.77 -1.5 614,908 + BT0496 0.77 +0.1 615,157 - BT0496 0.89 -2.7 615,173 - BT0496 0.90 -1.5 615,173 - BT0496 0.90 +1.1 615,175 - BT0496 0.90 -0.9 615,197 + -1.8 615,202 + -3.7 615,205 - -0.9 615,205 - -0.9 615,411 - +0.6 615,483 + BT0497 0.11 -1.5 615,486 - BT0497 0.12 -0.9 615,510 - BT0497 0.15 +0.1 615,513 + BT0497 0.16 -0.8 615,513 + BT0497 0.16 -0.9 615,536 + BT0497 0.19 -1.7 615,562 - BT0497 0.23 -1.3 615,753 + BT0497 0.52 +0.1 615,756 - BT0497 0.52 -1.9 615,893 + BT0497 0.73 -2.4 615,903 + BT0497 0.75 -0.4 615,909 - BT0497 0.75 +0.1 616,017 + -1.9 616,124 + +0.5 616,141 + +0.6 616,178 - BT0498 0.10 +0.1 616,319 - BT0498 0.26 -0.9 616,343 - BT0498 0.29 -0.9
Or see this region's nucleotide sequence