Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07850

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07840 and PGA1_c07850 are separated by 26 nucleotidesPGA1_c07850 and PGA1_c07860 are separated by 248 nucleotides PGA1_c07840: PGA1_c07840 - Beta-glucosidase (EC 3.2.1.21) (from data), at 811,626 to 812,960 _c07840 PGA1_c07850: PGA1_c07850 - transcriptional regulator, lacI family, at 812,987 to 814,018 _c07850 PGA1_c07860: PGA1_c07860 - alpha-glucosides-binding periplasmic protein AglE, at 814,267 to 815,619 _c07860 Position (kb) 812 813 814 815Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 812.002 kb on + strand, within PGA1_c07840at 812.010 kb on - strand, within PGA1_c07840at 812.022 kb on - strand, within PGA1_c07840at 812.039 kb on + strand, within PGA1_c07840at 812.040 kb on + strand, within PGA1_c07840at 812.102 kb on - strand, within PGA1_c07840at 812.265 kb on + strand, within PGA1_c07840at 812.275 kb on + strand, within PGA1_c07840at 812.405 kb on + strand, within PGA1_c07840at 812.413 kb on - strand, within PGA1_c07840at 812.449 kb on + strand, within PGA1_c07840at 812.471 kb on - strand, within PGA1_c07840at 812.476 kb on - strand, within PGA1_c07840at 812.605 kb on + strand, within PGA1_c07840at 812.618 kb on - strand, within PGA1_c07840at 812.620 kb on - strand, within PGA1_c07840at 812.678 kb on - strand, within PGA1_c07840at 812.690 kb on + strand, within PGA1_c07840at 812.695 kb on + strand, within PGA1_c07840at 812.703 kb on - strand, within PGA1_c07840at 812.703 kb on - strand, within PGA1_c07840at 812.705 kb on + strand, within PGA1_c07840at 812.864 kb on - strandat 812.984 kb on - strandat 813.014 kb on - strandat 813.058 kb on - strandat 813.136 kb on - strand, within PGA1_c07850at 813.235 kb on - strand, within PGA1_c07850at 813.360 kb on + strand, within PGA1_c07850at 813.408 kb on - strand, within PGA1_c07850at 813.457 kb on - strand, within PGA1_c07850at 813.538 kb on - strand, within PGA1_c07850at 813.546 kb on + strand, within PGA1_c07850at 813.575 kb on + strand, within PGA1_c07850at 813.590 kb on + strand, within PGA1_c07850at 813.598 kb on - strand, within PGA1_c07850at 813.616 kb on - strand, within PGA1_c07850at 813.693 kb on + strand, within PGA1_c07850at 813.920 kb on + strandat 813.930 kb on + strandat 813.985 kb on + strandat 814.061 kb on - strandat 814.071 kb on - strandat 814.071 kb on - strandat 814.094 kb on - strandat 814.112 kb on + strandat 814.223 kb on - strandat 814.241 kb on + strandat 814.298 kb on + strandat 814.298 kb on + strandat 814.306 kb on - strandat 814.306 kb on - strandat 814.326 kb on + strandat 814.326 kb on + strandat 814.326 kb on + strandat 814.387 kb on - strandat 814.389 kb on + strandat 814.419 kb on + strand, within PGA1_c07860at 814.450 kb on + strand, within PGA1_c07860at 814.458 kb on - strand, within PGA1_c07860at 814.458 kb on - strand, within PGA1_c07860at 814.504 kb on + strand, within PGA1_c07860at 814.509 kb on + strand, within PGA1_c07860at 814.509 kb on + strand, within PGA1_c07860at 814.523 kb on - strand, within PGA1_c07860at 814.560 kb on + strand, within PGA1_c07860at 814.611 kb on + strand, within PGA1_c07860at 814.619 kb on - strand, within PGA1_c07860at 814.647 kb on - strand, within PGA1_c07860at 814.652 kb on - strand, within PGA1_c07860at 814.692 kb on + strand, within PGA1_c07860at 814.692 kb on + strand, within PGA1_c07860at 814.700 kb on - strand, within PGA1_c07860at 814.700 kb on - strand, within PGA1_c07860at 814.700 kb on - strand, within PGA1_c07860at 814.720 kb on - strand, within PGA1_c07860at 814.752 kb on + strand, within PGA1_c07860at 814.760 kb on - strand, within PGA1_c07860at 814.838 kb on - strand, within PGA1_c07860at 814.861 kb on + strand, within PGA1_c07860at 814.885 kb on + strand, within PGA1_c07860at 814.940 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
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812,002 + PGA1_c07840 0.28 -1.2
812,010 - PGA1_c07840 0.29 -1.6
812,022 - PGA1_c07840 0.30 -0.8
812,039 + PGA1_c07840 0.31 -0.2
812,040 + PGA1_c07840 0.31 -0.0
812,102 - PGA1_c07840 0.36 +0.7
812,265 + PGA1_c07840 0.48 +0.3
812,275 + PGA1_c07840 0.49 +0.2
812,405 + PGA1_c07840 0.58 -0.1
812,413 - PGA1_c07840 0.59 +0.5
812,449 + PGA1_c07840 0.62 +1.1
812,471 - PGA1_c07840 0.63 -1.0
812,476 - PGA1_c07840 0.64 +1.6
812,605 + PGA1_c07840 0.73 -0.2
812,618 - PGA1_c07840 0.74 -0.4
812,620 - PGA1_c07840 0.74 -0.2
812,678 - PGA1_c07840 0.79 +1.1
812,690 + PGA1_c07840 0.80 -0.2
812,695 + PGA1_c07840 0.80 +0.5
812,703 - PGA1_c07840 0.81 +0.2
812,703 - PGA1_c07840 0.81 +0.5
812,705 + PGA1_c07840 0.81 +0.3
812,864 - -0.2
812,984 - +1.0
813,014 - -2.3
813,058 - +0.2
813,136 - PGA1_c07850 0.14 -3.5
813,235 - PGA1_c07850 0.24 +1.5
813,360 + PGA1_c07850 0.36 -0.3
813,408 - PGA1_c07850 0.41 -1.5
813,457 - PGA1_c07850 0.46 -0.8
813,538 - PGA1_c07850 0.53 +1.3
813,546 + PGA1_c07850 0.54 +0.1
813,575 + PGA1_c07850 0.57 -0.1
813,590 + PGA1_c07850 0.58 +0.0
813,598 - PGA1_c07850 0.59 -0.1
813,616 - PGA1_c07850 0.61 -1.1
813,693 + PGA1_c07850 0.68 +0.8
813,920 + -0.3
813,930 + -2.1
813,985 + -0.6
814,061 - +0.1
814,071 - -0.3
814,071 - -0.1
814,094 - +1.4
814,112 + -0.0
814,223 - +1.2
814,241 + +2.2
814,298 + +2.8
814,298 + +0.8
814,306 - +2.2
814,306 - +3.3
814,326 + +3.5
814,326 + +3.3
814,326 + +3.6
814,387 - +4.1
814,389 + +2.1
814,419 + PGA1_c07860 0.11 +2.6
814,450 + PGA1_c07860 0.14 +1.7
814,458 - PGA1_c07860 0.14 +2.7
814,458 - PGA1_c07860 0.14 +2.6
814,504 + PGA1_c07860 0.18 +3.7
814,509 + PGA1_c07860 0.18 +3.4
814,509 + PGA1_c07860 0.18 +3.7
814,523 - PGA1_c07860 0.19 +3.6
814,560 + PGA1_c07860 0.22 +2.9
814,611 + PGA1_c07860 0.25 +2.2
814,619 - PGA1_c07860 0.26 +2.6
814,647 - PGA1_c07860 0.28 +2.9
814,652 - PGA1_c07860 0.28 +2.0
814,692 + PGA1_c07860 0.31 +3.0
814,692 + PGA1_c07860 0.31 +2.3
814,700 - PGA1_c07860 0.32 +3.2
814,700 - PGA1_c07860 0.32 +3.5
814,700 - PGA1_c07860 0.32 +3.4
814,720 - PGA1_c07860 0.33 +2.6
814,752 + PGA1_c07860 0.36 +1.9
814,760 - PGA1_c07860 0.36 +2.8
814,838 - PGA1_c07860 0.42 +1.5
814,861 + PGA1_c07860 0.44 +3.6
814,885 + PGA1_c07860 0.46 +1.1
814,940 + PGA1_c07860 0.50 +2.9
814,964 + PGA1_c07860 0.52 +2.6
814,964 + PGA1_c07860 0.52 +2.2
814,964 + PGA1_c07860 0.52 +2.6
814,964 + PGA1_c07860 0.52 +3.1
814,964 + PGA1_c07860 0.52 +2.7
814,964 + PGA1_c07860 0.52 +2.3
814,972 - PGA1_c07860 0.52 +3.2
814,972 - PGA1_c07860 0.52 +2.6
814,972 - PGA1_c07860 0.52 +2.7
814,972 - PGA1_c07860 0.52 +1.0
814,972 - PGA1_c07860 0.52 +2.6

Or see this region's nucleotide sequence