Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07830

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07820 and PGA1_c07830 are separated by 4 nucleotidesPGA1_c07830 and PGA1_c07840 are separated by 22 nucleotides PGA1_c07820: PGA1_c07820 - putative peptidase M22, at 809,260 to 810,444 _c07820 PGA1_c07830: PGA1_c07830 - acetylornithine deacetylase ArgE, at 810,449 to 811,603 _c07830 PGA1_c07840: PGA1_c07840 - Beta-glucosidase (EC 3.2.1.21) (from data), at 811,626 to 812,960 _c07840 Position (kb) 810 811 812Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 809.484 kb on - strand, within PGA1_c07820at 809.517 kb on - strand, within PGA1_c07820at 809.517 kb on - strand, within PGA1_c07820at 809.623 kb on + strand, within PGA1_c07820at 809.658 kb on + strand, within PGA1_c07820at 809.658 kb on + strand, within PGA1_c07820at 809.716 kb on - strand, within PGA1_c07820at 809.766 kb on + strand, within PGA1_c07820at 809.766 kb on + strand, within PGA1_c07820at 809.794 kb on - strand, within PGA1_c07820at 809.796 kb on + strand, within PGA1_c07820at 809.825 kb on - strand, within PGA1_c07820at 809.825 kb on - strand, within PGA1_c07820at 809.860 kb on - strand, within PGA1_c07820at 809.889 kb on + strand, within PGA1_c07820at 809.889 kb on + strand, within PGA1_c07820at 809.897 kb on - strand, within PGA1_c07820at 809.935 kb on - strand, within PGA1_c07820at 809.945 kb on - strand, within PGA1_c07820at 809.953 kb on + strand, within PGA1_c07820at 810.110 kb on - strand, within PGA1_c07820at 810.110 kb on - strand, within PGA1_c07820at 810.232 kb on + strand, within PGA1_c07820at 810.237 kb on + strand, within PGA1_c07820at 810.237 kb on + strand, within PGA1_c07820at 810.245 kb on - strand, within PGA1_c07820at 810.258 kb on + strand, within PGA1_c07820at 810.259 kb on - strand, within PGA1_c07820at 810.268 kb on + strand, within PGA1_c07820at 810.285 kb on + strand, within PGA1_c07820at 810.292 kb on + strand, within PGA1_c07820at 810.293 kb on - strand, within PGA1_c07820at 810.307 kb on + strand, within PGA1_c07820at 810.313 kb on - strand, within PGA1_c07820at 810.347 kb on + strandat 810.347 kb on + strandat 810.360 kb on - strandat 810.410 kb on + strandat 810.410 kb on + strandat 810.410 kb on + strandat 810.410 kb on + strandat 810.410 kb on + strandat 810.418 kb on - strandat 810.473 kb on - strandat 810.473 kb on - strandat 810.473 kb on - strandat 810.546 kb on + strandat 810.546 kb on + strandat 810.546 kb on + strandat 810.554 kb on - strandat 810.554 kb on - strandat 810.696 kb on - strand, within PGA1_c07830at 810.733 kb on + strand, within PGA1_c07830at 810.733 kb on + strand, within PGA1_c07830at 810.814 kb on - strand, within PGA1_c07830at 810.854 kb on - strand, within PGA1_c07830at 810.897 kb on - strand, within PGA1_c07830at 810.930 kb on + strand, within PGA1_c07830at 810.964 kb on + strand, within PGA1_c07830at 810.983 kb on - strand, within PGA1_c07830at 811.002 kb on + strand, within PGA1_c07830at 811.010 kb on - strand, within PGA1_c07830at 811.010 kb on - strand, within PGA1_c07830at 811.010 kb on - strand, within PGA1_c07830at 811.043 kb on + strand, within PGA1_c07830at 811.048 kb on + strand, within PGA1_c07830at 811.104 kb on + strand, within PGA1_c07830at 811.113 kb on - strand, within PGA1_c07830at 811.125 kb on + strand, within PGA1_c07830at 811.133 kb on - strand, within PGA1_c07830at 811.143 kb on - strand, within PGA1_c07830at 811.150 kb on + strand, within PGA1_c07830at 811.153 kb on - strand, within PGA1_c07830at 811.158 kb on - strand, within PGA1_c07830at 811.160 kb on + strand, within PGA1_c07830at 811.229 kb on + strand, within PGA1_c07830at 811.229 kb on + strand, within PGA1_c07830at 811.255 kb on - strand, within PGA1_c07830at 811.327 kb on + strand, within PGA1_c07830at 811.362 kb on - strand, within PGA1_c07830at 811.363 kb on + strand, within PGA1_c07830at 811.372 kb on - strand, within PGA1_c07830at 811.406 kb on - strand, within PGA1_c07830at 811.476 kb on - strand, within PGA1_c07830at 811.568 kb on + strandat 811.576 kb on - strandat 811.628 kb on + strandat 811.651 kb on + strandat 811.681 kb on - strandat 811.722 kb on - strandat 811.742 kb on - strandat 811.742 kb on - strandat 811.782 kb on - strand, within PGA1_c07840at 811.788 kb on + strand, within PGA1_c07840at 811.819 kb on + strand, within PGA1_c07840at 811.819 kb on + strand, within PGA1_c07840at 811.821 kb on + strand, within PGA1_c07840at 811.827 kb on - strand, within PGA1_c07840at 811.827 kb on - strand, within PGA1_c07840at 811.933 kb on + strand, within PGA1_c07840at 811.941 kb on - strand, within PGA1_c07840at 811.946 kb on + strand, within PGA1_c07840at 811.956 kb on - strand, within PGA1_c07840at 812.002 kb on + strand, within PGA1_c07840at 812.010 kb on - strand, within PGA1_c07840at 812.022 kb on - strand, within PGA1_c07840at 812.039 kb on + strand, within PGA1_c07840at 812.040 kb on + strand, within PGA1_c07840at 812.102 kb on - strand, within PGA1_c07840at 812.265 kb on + strand, within PGA1_c07840at 812.275 kb on + strand, within PGA1_c07840at 812.405 kb on + strand, within PGA1_c07840at 812.413 kb on - strand, within PGA1_c07840at 812.449 kb on + strand, within PGA1_c07840at 812.471 kb on - strand, within PGA1_c07840at 812.476 kb on - strand, within PGA1_c07840

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
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809,484 - PGA1_c07820 0.19 +0.5
809,517 - PGA1_c07820 0.22 +0.5
809,517 - PGA1_c07820 0.22 +0.8
809,623 + PGA1_c07820 0.31 +0.3
809,658 + PGA1_c07820 0.34 -1.0
809,658 + PGA1_c07820 0.34 -0.5
809,716 - PGA1_c07820 0.38 -1.4
809,766 + PGA1_c07820 0.43 -0.4
809,766 + PGA1_c07820 0.43 -1.5
809,794 - PGA1_c07820 0.45 -2.2
809,796 + PGA1_c07820 0.45 -0.6
809,825 - PGA1_c07820 0.48 -3.0
809,825 - PGA1_c07820 0.48 -0.6
809,860 - PGA1_c07820 0.51 +0.2
809,889 + PGA1_c07820 0.53 -0.1
809,889 + PGA1_c07820 0.53 -0.5
809,897 - PGA1_c07820 0.54 -0.1
809,935 - PGA1_c07820 0.57 -0.2
809,945 - PGA1_c07820 0.58 +0.4
809,953 + PGA1_c07820 0.58 +0.6
810,110 - PGA1_c07820 0.72 -0.5
810,110 - PGA1_c07820 0.72 -0.1
810,232 + PGA1_c07820 0.82 +0.1
810,237 + PGA1_c07820 0.82 +1.0
810,237 + PGA1_c07820 0.82 -0.5
810,245 - PGA1_c07820 0.83 +0.3
810,258 + PGA1_c07820 0.84 -0.3
810,259 - PGA1_c07820 0.84 +0.7
810,268 + PGA1_c07820 0.85 -1.5
810,285 + PGA1_c07820 0.86 -0.5
810,292 + PGA1_c07820 0.87 +0.3
810,293 - PGA1_c07820 0.87 +0.3
810,307 + PGA1_c07820 0.88 -0.1
810,313 - PGA1_c07820 0.89 -0.6
810,347 + +1.1
810,347 + +0.1
810,360 - +1.2
810,410 + -0.4
810,410 + -0.6
810,410 + -0.7
810,410 + -1.2
810,410 + -1.3
810,418 - +0.7
810,473 - -1.0
810,473 - +0.6
810,473 - +1.8
810,546 + -2.5
810,546 + -0.4
810,546 + +0.1
810,554 - -0.3
810,554 - -0.7
810,696 - PGA1_c07830 0.21 -0.1
810,733 + PGA1_c07830 0.25 -0.6
810,733 + PGA1_c07830 0.25 +0.0
810,814 - PGA1_c07830 0.32 +0.8
810,854 - PGA1_c07830 0.35 +0.5
810,897 - PGA1_c07830 0.39 -0.7
810,930 + PGA1_c07830 0.42 +0.0
810,964 + PGA1_c07830 0.45 -0.2
810,983 - PGA1_c07830 0.46 -0.7
811,002 + PGA1_c07830 0.48 -0.1
811,010 - PGA1_c07830 0.49 -0.6
811,010 - PGA1_c07830 0.49 -0.8
811,010 - PGA1_c07830 0.49 +0.4
811,043 + PGA1_c07830 0.51 +0.0
811,048 + PGA1_c07830 0.52 -0.2
811,104 + PGA1_c07830 0.57 +0.9
811,113 - PGA1_c07830 0.57 -1.7
811,125 + PGA1_c07830 0.59 -0.2
811,133 - PGA1_c07830 0.59 -0.5
811,143 - PGA1_c07830 0.60 +1.0
811,150 + PGA1_c07830 0.61 +0.9
811,153 - PGA1_c07830 0.61 -0.2
811,158 - PGA1_c07830 0.61 +0.1
811,160 + PGA1_c07830 0.62 -1.7
811,229 + PGA1_c07830 0.68 -1.7
811,229 + PGA1_c07830 0.68 -0.9
811,255 - PGA1_c07830 0.70 -0.2
811,327 + PGA1_c07830 0.76 +0.8
811,362 - PGA1_c07830 0.79 +1.0
811,363 + PGA1_c07830 0.79 -2.3
811,372 - PGA1_c07830 0.80 +0.4
811,406 - PGA1_c07830 0.83 +0.3
811,476 - PGA1_c07830 0.89 +0.1
811,568 + -0.1
811,576 - -0.9
811,628 + +0.4
811,651 + +0.2
811,681 - +0.3
811,722 - +1.0
811,742 - -0.0
811,742 - -1.2
811,782 - PGA1_c07840 0.12 -1.0
811,788 + PGA1_c07840 0.12 -0.8
811,819 + PGA1_c07840 0.14 +1.5
811,819 + PGA1_c07840 0.14 +0.5
811,821 + PGA1_c07840 0.15 +0.3
811,827 - PGA1_c07840 0.15 +1.1
811,827 - PGA1_c07840 0.15 +1.6
811,933 + PGA1_c07840 0.23 +0.5
811,941 - PGA1_c07840 0.24 +0.9
811,946 + PGA1_c07840 0.24 -0.8
811,956 - PGA1_c07840 0.25 -0.8
812,002 + PGA1_c07840 0.28 -1.2
812,010 - PGA1_c07840 0.29 -1.6
812,022 - PGA1_c07840 0.30 -0.8
812,039 + PGA1_c07840 0.31 -0.2
812,040 + PGA1_c07840 0.31 -0.0
812,102 - PGA1_c07840 0.36 +0.7
812,265 + PGA1_c07840 0.48 +0.3
812,275 + PGA1_c07840 0.49 +0.2
812,405 + PGA1_c07840 0.58 -0.1
812,413 - PGA1_c07840 0.59 +0.5
812,449 + PGA1_c07840 0.62 +1.1
812,471 - PGA1_c07840 0.63 -1.0
812,476 - PGA1_c07840 0.64 +1.6

Or see this region's nucleotide sequence