Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07490

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07480 and PGA1_c07490 overlap by 1 nucleotidesPGA1_c07490 and PGA1_c07500 are separated by 98 nucleotidesPGA1_c07500 and PGA1_c07510 are separated by 41 nucleotides PGA1_c07480: PGA1_c07480 - Lysophospholipase, at 772,837 to 773,799 _c07480 PGA1_c07490: PGA1_c07490 - Putative sterol carrier protein, at 773,799 to 774,086 _c07490 PGA1_c07500: PGA1_c07500 - hypothetical protein, at 774,185 to 774,754 _c07500 PGA1_c07510: PGA1_c07510 - DNA/RNA helicase-like protein, at 774,796 to 777,813 _c07510 Position (kb) 773 774 775Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 772.815 kb on - strandat 772.817 kb on + strandat 772.817 kb on + strandat 772.819 kb on - strandat 772.909 kb on - strandat 772.937 kb on + strand, within PGA1_c07480at 772.972 kb on + strand, within PGA1_c07480at 773.019 kb on + strand, within PGA1_c07480at 773.024 kb on + strand, within PGA1_c07480at 773.032 kb on - strand, within PGA1_c07480at 773.053 kb on + strand, within PGA1_c07480at 773.078 kb on + strand, within PGA1_c07480at 773.090 kb on - strand, within PGA1_c07480at 773.135 kb on + strand, within PGA1_c07480at 773.135 kb on + strand, within PGA1_c07480at 773.143 kb on - strand, within PGA1_c07480at 773.143 kb on - strand, within PGA1_c07480at 773.161 kb on - strand, within PGA1_c07480at 773.200 kb on + strand, within PGA1_c07480at 773.200 kb on + strand, within PGA1_c07480at 773.298 kb on + strand, within PGA1_c07480at 773.298 kb on + strand, within PGA1_c07480at 773.301 kb on - strand, within PGA1_c07480at 773.301 kb on - strand, within PGA1_c07480at 773.326 kb on - strand, within PGA1_c07480at 773.352 kb on - strand, within PGA1_c07480at 773.352 kb on - strand, within PGA1_c07480at 773.362 kb on - strand, within PGA1_c07480at 773.379 kb on + strand, within PGA1_c07480at 773.382 kb on + strand, within PGA1_c07480at 773.409 kb on + strand, within PGA1_c07480at 773.562 kb on + strand, within PGA1_c07480at 773.582 kb on + strand, within PGA1_c07480at 773.586 kb on + strand, within PGA1_c07480at 773.586 kb on + strand, within PGA1_c07480at 773.587 kb on + strand, within PGA1_c07480at 773.587 kb on + strand, within PGA1_c07480at 773.587 kb on + strand, within PGA1_c07480at 773.697 kb on + strand, within PGA1_c07480at 773.731 kb on + strandat 773.761 kb on + strandat 773.773 kb on + strandat 773.797 kb on + strandat 773.805 kb on - strandat 773.817 kb on - strandat 773.913 kb on + strand, within PGA1_c07490at 774.002 kb on - strand, within PGA1_c07490at 774.069 kb on + strandat 774.086 kb on + strandat 774.107 kb on - strandat 774.166 kb on + strandat 774.172 kb on + strandat 774.172 kb on + strandat 774.174 kb on - strandat 774.180 kb on - strandat 774.180 kb on - strandat 774.180 kb on - strandat 774.180 kb on - strandat 774.213 kb on - strandat 774.229 kb on + strandat 774.229 kb on + strandat 774.237 kb on - strandat 774.247 kb on - strand, within PGA1_c07500at 774.247 kb on - strand, within PGA1_c07500at 774.310 kb on + strand, within PGA1_c07500at 774.310 kb on + strand, within PGA1_c07500at 774.310 kb on + strand, within PGA1_c07500at 774.311 kb on + strand, within PGA1_c07500at 774.318 kb on - strand, within PGA1_c07500at 774.318 kb on - strand, within PGA1_c07500at 774.338 kb on + strand, within PGA1_c07500at 774.338 kb on + strand, within PGA1_c07500at 774.341 kb on - strand, within PGA1_c07500at 774.343 kb on + strand, within PGA1_c07500at 774.356 kb on - strand, within PGA1_c07500at 774.356 kb on - strand, within PGA1_c07500at 774.362 kb on + strand, within PGA1_c07500at 774.370 kb on - strand, within PGA1_c07500at 774.373 kb on + strand, within PGA1_c07500at 774.420 kb on + strand, within PGA1_c07500at 774.462 kb on - strand, within PGA1_c07500at 774.502 kb on + strand, within PGA1_c07500at 774.502 kb on + strand, within PGA1_c07500at 774.577 kb on + strand, within PGA1_c07500at 774.585 kb on - strand, within PGA1_c07500at 774.631 kb on + strand, within PGA1_c07500at 774.631 kb on + strand, within PGA1_c07500at 774.639 kb on - strand, within PGA1_c07500at 774.661 kb on - strand, within PGA1_c07500at 774.669 kb on - strand, within PGA1_c07500at 774.676 kb on + strand, within PGA1_c07500at 774.684 kb on - strand, within PGA1_c07500at 774.727 kb on + strandat 774.742 kb on - strandat 774.742 kb on - strandat 774.749 kb on + strandat 774.781 kb on - strandat 774.828 kb on + strandat 774.831 kb on - strandat 774.837 kb on - strandat 774.849 kb on + strandat 774.897 kb on + strandat 774.956 kb on - strandat 774.979 kb on - strandat 775.020 kb on - strandat 775.037 kb on - strandat 775.045 kb on + strandat 775.045 kb on + strandat 775.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
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772,815 - -0.4
772,817 + +0.4
772,817 + +1.3
772,819 - -0.8
772,909 - +0.3
772,937 + PGA1_c07480 0.10 -0.3
772,972 + PGA1_c07480 0.14 -0.6
773,019 + PGA1_c07480 0.19 -0.4
773,024 + PGA1_c07480 0.19 -0.1
773,032 - PGA1_c07480 0.20 -0.3
773,053 + PGA1_c07480 0.22 +0.1
773,078 + PGA1_c07480 0.25 -0.5
773,090 - PGA1_c07480 0.26 -0.3
773,135 + PGA1_c07480 0.31 -1.4
773,135 + PGA1_c07480 0.31 -0.3
773,143 - PGA1_c07480 0.32 +0.3
773,143 - PGA1_c07480 0.32 +0.2
773,161 - PGA1_c07480 0.34 -0.8
773,200 + PGA1_c07480 0.38 -0.4
773,200 + PGA1_c07480 0.38 -0.3
773,298 + PGA1_c07480 0.48 +0.4
773,298 + PGA1_c07480 0.48 -0.6
773,301 - PGA1_c07480 0.48 +0.7
773,301 - PGA1_c07480 0.48 -0.2
773,326 - PGA1_c07480 0.51 -0.6
773,352 - PGA1_c07480 0.53 -1.1
773,352 - PGA1_c07480 0.53 -0.6
773,362 - PGA1_c07480 0.55 -0.5
773,379 + PGA1_c07480 0.56 -0.7
773,382 + PGA1_c07480 0.57 +0.4
773,409 + PGA1_c07480 0.59 -0.2
773,562 + PGA1_c07480 0.75 -1.2
773,582 + PGA1_c07480 0.77 -0.4
773,586 + PGA1_c07480 0.78 -0.5
773,586 + PGA1_c07480 0.78 -0.2
773,587 + PGA1_c07480 0.78 -0.5
773,587 + PGA1_c07480 0.78 -0.1
773,587 + PGA1_c07480 0.78 -1.4
773,697 + PGA1_c07480 0.89 +1.4
773,731 + -1.5
773,761 + +0.7
773,773 + +0.8
773,797 + -0.2
773,805 - -1.5
773,817 - +0.4
773,913 + PGA1_c07490 0.40 -2.0
774,002 - PGA1_c07490 0.70 -0.4
774,069 + -2.2
774,086 + -0.3
774,107 - +0.0
774,166 + -0.1
774,172 + +1.3
774,172 + +0.4
774,174 - +1.8
774,180 - -0.4
774,180 - +0.6
774,180 - -0.1
774,180 - +0.6
774,213 - -0.8
774,229 + +1.4
774,229 + +0.7
774,237 - +0.2
774,247 - PGA1_c07500 0.11 -3.0
774,247 - PGA1_c07500 0.11 -1.1
774,310 + PGA1_c07500 0.22 -0.6
774,310 + PGA1_c07500 0.22 +1.4
774,310 + PGA1_c07500 0.22 -1.8
774,311 + PGA1_c07500 0.22 +0.5
774,318 - PGA1_c07500 0.23 +0.6
774,318 - PGA1_c07500 0.23 +0.5
774,338 + PGA1_c07500 0.27 -0.8
774,338 + PGA1_c07500 0.27 +0.3
774,341 - PGA1_c07500 0.27 +0.9
774,343 + PGA1_c07500 0.28 +2.0
774,356 - PGA1_c07500 0.30 -0.1
774,356 - PGA1_c07500 0.30 -0.8
774,362 + PGA1_c07500 0.31 +0.9
774,370 - PGA1_c07500 0.32 -0.9
774,373 + PGA1_c07500 0.33 -0.8
774,420 + PGA1_c07500 0.41 +0.3
774,462 - PGA1_c07500 0.49 +0.5
774,502 + PGA1_c07500 0.56 -0.5
774,502 + PGA1_c07500 0.56 -1.2
774,577 + PGA1_c07500 0.69 -0.3
774,585 - PGA1_c07500 0.70 +0.5
774,631 + PGA1_c07500 0.78 +0.5
774,631 + PGA1_c07500 0.78 +0.7
774,639 - PGA1_c07500 0.80 -1.1
774,661 - PGA1_c07500 0.84 +1.7
774,669 - PGA1_c07500 0.85 -0.8
774,676 + PGA1_c07500 0.86 -0.1
774,684 - PGA1_c07500 0.88 +0.5
774,727 + +1.4
774,742 - -0.4
774,742 - -0.6
774,749 + -0.0
774,781 - +1.2
774,828 + +0.3
774,831 - -0.9
774,837 - -1.3
774,849 + +0.4
774,897 + -0.5
774,956 - +0.5
774,979 - +0.8
775,020 - +0.5
775,037 - -1.9
775,045 + -0.7
775,045 + +1.3
775,064 - -0.9

Or see this region's nucleotide sequence