Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05230

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05220 and PGA1_c05230 are separated by 111 nucleotidesPGA1_c05230 and PGA1_c05240 are separated by 327 nucleotides PGA1_c05220: PGA1_c05220 - putative sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 515,556 to 516,674 _c05220 PGA1_c05230: PGA1_c05230 - ABC transporter, extracellular solute-binding protein, at 516,786 to 518,519 _c05230 PGA1_c05240: PGA1_c05240 - Predicted N6-adenine-specific DNA methylase, at 518,847 to 519,977 _c05240 Position (kb) 516 517 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 515.800 kb on + strand, within PGA1_c05220at 515.862 kb on + strand, within PGA1_c05220at 515.870 kb on - strand, within PGA1_c05220at 515.882 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.895 kb on - strand, within PGA1_c05220at 515.895 kb on - strand, within PGA1_c05220at 515.948 kb on + strand, within PGA1_c05220at 515.953 kb on + strand, within PGA1_c05220at 515.956 kb on - strand, within PGA1_c05220at 516.004 kb on + strand, within PGA1_c05220at 516.010 kb on + strand, within PGA1_c05220at 516.018 kb on - strand, within PGA1_c05220at 516.039 kb on - strand, within PGA1_c05220at 516.077 kb on + strand, within PGA1_c05220at 516.204 kb on - strand, within PGA1_c05220at 516.209 kb on - strand, within PGA1_c05220at 516.209 kb on - strand, within PGA1_c05220at 516.219 kb on + strand, within PGA1_c05220at 516.219 kb on + strand, within PGA1_c05220at 516.257 kb on + strand, within PGA1_c05220at 516.372 kb on - strand, within PGA1_c05220at 516.431 kb on + strand, within PGA1_c05220at 516.441 kb on - strand, within PGA1_c05220at 516.587 kb on + strandat 516.592 kb on + strandat 516.711 kb on - strandat 516.751 kb on + strandat 516.768 kb on + strandat 516.783 kb on + strandat 516.783 kb on - strandat 516.791 kb on - strandat 516.815 kb on + strandat 516.829 kb on + strandat 516.837 kb on - strandat 516.945 kb on - strandat 516.958 kb on - strandat 516.962 kb on + strand, within PGA1_c05230at 516.969 kb on + strand, within PGA1_c05230at 516.970 kb on - strand, within PGA1_c05230at 517.002 kb on + strand, within PGA1_c05230at 517.002 kb on + strand, within PGA1_c05230at 517.033 kb on + strand, within PGA1_c05230at 517.041 kb on - strand, within PGA1_c05230at 517.060 kb on - strand, within PGA1_c05230at 517.070 kb on - strand, within PGA1_c05230at 517.073 kb on + strand, within PGA1_c05230at 517.073 kb on + strand, within PGA1_c05230at 517.073 kb on + strand, within PGA1_c05230at 517.091 kb on + strand, within PGA1_c05230at 517.110 kb on - strand, within PGA1_c05230at 517.173 kb on + strand, within PGA1_c05230at 517.180 kb on - strand, within PGA1_c05230at 517.198 kb on - strand, within PGA1_c05230at 517.212 kb on + strand, within PGA1_c05230at 517.212 kb on + strand, within PGA1_c05230at 517.220 kb on - strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.246 kb on + strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.254 kb on - strand, within PGA1_c05230at 517.256 kb on - strand, within PGA1_c05230at 517.318 kb on + strand, within PGA1_c05230at 517.365 kb on + strand, within PGA1_c05230at 517.378 kb on - strand, within PGA1_c05230at 517.503 kb on - strand, within PGA1_c05230at 517.505 kb on + strand, within PGA1_c05230at 517.505 kb on + strand, within PGA1_c05230at 517.513 kb on - strand, within PGA1_c05230at 517.590 kb on - strand, within PGA1_c05230at 517.761 kb on - strand, within PGA1_c05230at 517.769 kb on + strand, within PGA1_c05230at 517.826 kb on + strand, within PGA1_c05230at 517.857 kb on + strand, within PGA1_c05230at 517.878 kb on + strand, within PGA1_c05230at 517.878 kb on - strand, within PGA1_c05230at 517.886 kb on + strand, within PGA1_c05230at 517.900 kb on - strand, within PGA1_c05230at 517.931 kb on - strand, within PGA1_c05230at 517.931 kb on - strand, within PGA1_c05230at 517.960 kb on + strand, within PGA1_c05230at 517.960 kb on + strand, within PGA1_c05230at 517.968 kb on - strand, within PGA1_c05230at 518.017 kb on + strand, within PGA1_c05230at 518.017 kb on + strand, within PGA1_c05230at 518.017 kb on + strand, within PGA1_c05230at 518.017 kb on + strand, within PGA1_c05230at 518.017 kb on + strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.032 kb on + strand, within PGA1_c05230at 518.040 kb on - strand, within PGA1_c05230at 518.072 kb on - strand, within PGA1_c05230at 518.097 kb on + strand, within PGA1_c05230at 518.131 kb on + strand, within PGA1_c05230at 518.139 kb on - strand, within PGA1_c05230at 518.149 kb on - strand, within PGA1_c05230at 518.149 kb on - strand, within PGA1_c05230at 518.186 kb on + strand, within PGA1_c05230at 518.193 kb on + strand, within PGA1_c05230at 518.193 kb on + strand, within PGA1_c05230at 518.193 kb on + strand, within PGA1_c05230at 518.201 kb on - strand, within PGA1_c05230at 518.201 kb on - strand, within PGA1_c05230at 518.201 kb on - strand, within PGA1_c05230at 518.201 kb on - strand, within PGA1_c05230at 518.201 kb on - strand, within PGA1_c05230at 518.211 kb on - strand, within PGA1_c05230at 518.211 kb on - strand, within PGA1_c05230at 518.211 kb on - strand, within PGA1_c05230at 518.229 kb on + strand, within PGA1_c05230at 518.243 kb on + strand, within PGA1_c05230at 518.274 kb on + strand, within PGA1_c05230at 518.274 kb on + strand, within PGA1_c05230at 518.274 kb on + strand, within PGA1_c05230at 518.311 kb on + strand, within PGA1_c05230at 518.311 kb on + strand, within PGA1_c05230at 518.311 kb on + strand, within PGA1_c05230at 518.338 kb on + strand, within PGA1_c05230at 518.338 kb on + strand, within PGA1_c05230at 518.338 kb on + strand, within PGA1_c05230at 518.338 kb on + strand, within PGA1_c05230at 518.338 kb on + strand, within PGA1_c05230at 518.346 kb on - strandat 518.346 kb on - strandat 518.346 kb on - strandat 518.346 kb on - strandat 518.346 kb on - strandat 518.346 kb on - strandat 518.348 kb on + strandat 518.355 kb on - strandat 518.356 kb on - strandat 518.356 kb on - strandat 518.397 kb on + strandat 518.397 kb on + strandat 518.397 kb on + strandat 518.400 kb on - strandat 518.454 kb on + strandat 518.458 kb on - strandat 518.462 kb on - strandat 518.512 kb on - strandat 518.536 kb on + strandat 518.536 kb on + strandat 518.544 kb on - strandat 518.583 kb on + strandat 518.591 kb on - strandat 518.680 kb on - strandat 518.693 kb on + strandat 518.694 kb on - strandat 518.701 kb on - strandat 518.731 kb on + strandat 518.803 kb on + strandat 518.838 kb on + strandat 518.898 kb on + strandat 518.967 kb on + strand, within PGA1_c05240at 518.976 kb on - strand, within PGA1_c05240at 519.024 kb on + strand, within PGA1_c05240at 519.041 kb on + strand, within PGA1_c05240at 519.058 kb on + strand, within PGA1_c05240at 519.058 kb on + strand, within PGA1_c05240at 519.066 kb on - strand, within PGA1_c05240at 519.113 kb on + strand, within PGA1_c05240at 519.113 kb on + strand, within PGA1_c05240at 519.118 kb on + strand, within PGA1_c05240at 519.134 kb on - strand, within PGA1_c05240at 519.206 kb on + strand, within PGA1_c05240at 519.206 kb on + strand, within PGA1_c05240at 519.214 kb on - strand, within PGA1_c05240at 519.214 kb on - strand, within PGA1_c05240at 519.233 kb on + strand, within PGA1_c05240at 519.256 kb on + strand, within PGA1_c05240at 519.264 kb on - strand, within PGA1_c05240at 519.264 kb on - strand, within PGA1_c05240at 519.264 kb on - strand, within PGA1_c05240at 519.264 kb on - strand, within PGA1_c05240at 519.273 kb on + strand, within PGA1_c05240at 519.306 kb on - strand, within PGA1_c05240at 519.328 kb on - strand, within PGA1_c05240at 519.342 kb on + strand, within PGA1_c05240at 519.347 kb on + strand, within PGA1_c05240at 519.434 kb on - strand, within PGA1_c05240at 519.455 kb on + strand, within PGA1_c05240

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
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515,800 + PGA1_c05220 0.22 -0.3
515,862 + PGA1_c05220 0.27 +0.2
515,870 - PGA1_c05220 0.28 +1.2
515,882 + PGA1_c05220 0.29 -0.8
515,887 + PGA1_c05220 0.30 -1.2
515,887 + PGA1_c05220 0.30 -0.8
515,887 + PGA1_c05220 0.30 -0.0
515,887 + PGA1_c05220 0.30 -0.5
515,887 + PGA1_c05220 0.30 +1.0
515,887 + PGA1_c05220 0.30 +0.8
515,895 - PGA1_c05220 0.30 -0.3
515,895 - PGA1_c05220 0.30 +0.6
515,948 + PGA1_c05220 0.35 +0.6
515,953 + PGA1_c05220 0.35 -1.2
515,956 - PGA1_c05220 0.36 +0.3
516,004 + PGA1_c05220 0.40 -0.5
516,010 + PGA1_c05220 0.41 +0.0
516,018 - PGA1_c05220 0.41 +0.1
516,039 - PGA1_c05220 0.43 +0.5
516,077 + PGA1_c05220 0.47 +0.4
516,204 - PGA1_c05220 0.58 +0.1
516,209 - PGA1_c05220 0.58 +0.5
516,209 - PGA1_c05220 0.58 -0.9
516,219 + PGA1_c05220 0.59 -0.5
516,219 + PGA1_c05220 0.59 -1.6
516,257 + PGA1_c05220 0.63 -0.8
516,372 - PGA1_c05220 0.73 -0.5
516,431 + PGA1_c05220 0.78 +0.6
516,441 - PGA1_c05220 0.79 -0.9
516,587 + -2.0
516,592 + +0.3
516,711 - +0.1
516,751 + -1.2
516,768 + -2.0
516,783 + +0.2
516,783 - -0.4
516,791 - -1.2
516,815 + -0.2
516,829 + +0.3
516,837 - -1.4
516,945 - -0.7
516,958 - -1.0
516,962 + PGA1_c05230 0.10 -0.5
516,969 + PGA1_c05230 0.11 +0.6
516,970 - PGA1_c05230 0.11 +0.3
517,002 + PGA1_c05230 0.12 +0.1
517,002 + PGA1_c05230 0.12 +0.4
517,033 + PGA1_c05230 0.14 -1.9
517,041 - PGA1_c05230 0.15 +0.1
517,060 - PGA1_c05230 0.16 +0.2
517,070 - PGA1_c05230 0.16 -3.0
517,073 + PGA1_c05230 0.17 -0.1
517,073 + PGA1_c05230 0.17 +0.1
517,073 + PGA1_c05230 0.17 -1.6
517,091 + PGA1_c05230 0.18 -0.5
517,110 - PGA1_c05230 0.19 +0.6
517,173 + PGA1_c05230 0.22 -0.9
517,180 - PGA1_c05230 0.23 +0.6
517,198 - PGA1_c05230 0.24 -0.9
517,212 + PGA1_c05230 0.25 +0.6
517,212 + PGA1_c05230 0.25 -0.9
517,220 - PGA1_c05230 0.25 -0.2
517,246 + PGA1_c05230 0.27 -1.0
517,246 + PGA1_c05230 0.27 -1.2
517,246 + PGA1_c05230 0.27 -0.0
517,246 + PGA1_c05230 0.27 -0.5
517,254 - PGA1_c05230 0.27 -0.5
517,254 - PGA1_c05230 0.27 +0.3
517,254 - PGA1_c05230 0.27 -1.7
517,254 - PGA1_c05230 0.27 +0.4
517,254 - PGA1_c05230 0.27 -1.2
517,256 - PGA1_c05230 0.27 -0.1
517,318 + PGA1_c05230 0.31 -0.0
517,365 + PGA1_c05230 0.33 +0.7
517,378 - PGA1_c05230 0.34 -2.2
517,503 - PGA1_c05230 0.41 -0.5
517,505 + PGA1_c05230 0.41 +0.1
517,505 + PGA1_c05230 0.41 -0.8
517,513 - PGA1_c05230 0.42 -1.2
517,590 - PGA1_c05230 0.46 -0.0
517,761 - PGA1_c05230 0.56 -1.1
517,769 + PGA1_c05230 0.57 -1.7
517,826 + PGA1_c05230 0.60 +0.1
517,857 + PGA1_c05230 0.62 -2.2
517,878 + PGA1_c05230 0.63 -1.5
517,878 - PGA1_c05230 0.63 -1.3
517,886 + PGA1_c05230 0.63 +0.4
517,900 - PGA1_c05230 0.64 -0.2
517,931 - PGA1_c05230 0.66 -0.6
517,931 - PGA1_c05230 0.66 -1.2
517,960 + PGA1_c05230 0.68 +0.5
517,960 + PGA1_c05230 0.68 -1.5
517,968 - PGA1_c05230 0.68 -0.2
518,017 + PGA1_c05230 0.71 -1.2
518,017 + PGA1_c05230 0.71 -1.2
518,017 + PGA1_c05230 0.71 -1.0
518,017 + PGA1_c05230 0.71 -3.2
518,017 + PGA1_c05230 0.71 +0.2
518,025 - PGA1_c05230 0.71 +0.6
518,025 - PGA1_c05230 0.71 -3.1
518,025 - PGA1_c05230 0.71 +0.1
518,025 - PGA1_c05230 0.71 -1.9
518,025 - PGA1_c05230 0.71 -0.1
518,025 - PGA1_c05230 0.71 +0.6
518,025 - PGA1_c05230 0.71 -1.1
518,032 + PGA1_c05230 0.72 -0.5
518,040 - PGA1_c05230 0.72 -1.6
518,072 - PGA1_c05230 0.74 -0.1
518,097 + PGA1_c05230 0.76 +1.0
518,131 + PGA1_c05230 0.78 -0.5
518,139 - PGA1_c05230 0.78 -1.2
518,149 - PGA1_c05230 0.79 -1.6
518,149 - PGA1_c05230 0.79 +0.3
518,186 + PGA1_c05230 0.81 +0.9
518,193 + PGA1_c05230 0.81 -0.3
518,193 + PGA1_c05230 0.81 +0.1
518,193 + PGA1_c05230 0.81 -0.1
518,201 - PGA1_c05230 0.82 +0.8
518,201 - PGA1_c05230 0.82 -1.2
518,201 - PGA1_c05230 0.82 -0.0
518,201 - PGA1_c05230 0.82 -0.5
518,201 - PGA1_c05230 0.82 -0.1
518,211 - PGA1_c05230 0.82 -0.3
518,211 - PGA1_c05230 0.82 -0.8
518,211 - PGA1_c05230 0.82 -0.3
518,229 + PGA1_c05230 0.83 -1.2
518,243 + PGA1_c05230 0.84 -1.4
518,274 + PGA1_c05230 0.86 -2.2
518,274 + PGA1_c05230 0.86 -1.2
518,274 + PGA1_c05230 0.86 +1.6
518,311 + PGA1_c05230 0.88 -0.5
518,311 + PGA1_c05230 0.88 -1.8
518,311 + PGA1_c05230 0.88 -1.0
518,338 + PGA1_c05230 0.90 +0.4
518,338 + PGA1_c05230 0.90 -0.5
518,338 + PGA1_c05230 0.90 -0.3
518,338 + PGA1_c05230 0.90 -0.5
518,338 + PGA1_c05230 0.90 -1.3
518,346 - -0.5
518,346 - -0.3
518,346 - +0.0
518,346 - -0.0
518,346 - +0.6
518,346 - +0.5
518,348 + -3.5
518,355 - +1.0
518,356 - -0.5
518,356 - -1.1
518,397 + -0.5
518,397 + -0.6
518,397 + -1.3
518,400 - -2.3
518,454 + -0.1
518,458 - -1.7
518,462 - -0.9
518,512 - -0.2
518,536 + -0.8
518,536 + +1.1
518,544 - +0.2
518,583 + -1.0
518,591 - -1.8
518,680 - +1.9
518,693 + -0.0
518,694 - +0.5
518,701 - +1.6
518,731 + -0.9
518,803 + -0.6
518,838 + -0.4
518,898 + -0.4
518,967 + PGA1_c05240 0.11 +0.9
518,976 - PGA1_c05240 0.11 +0.4
519,024 + PGA1_c05240 0.16 -0.1
519,041 + PGA1_c05240 0.17 -2.0
519,058 + PGA1_c05240 0.19 +0.5
519,058 + PGA1_c05240 0.19 +0.6
519,066 - PGA1_c05240 0.19 -0.4
519,113 + PGA1_c05240 0.24 -1.4
519,113 + PGA1_c05240 0.24 -0.6
519,118 + PGA1_c05240 0.24 -0.4
519,134 - PGA1_c05240 0.25 +0.6
519,206 + PGA1_c05240 0.32 -0.2
519,206 + PGA1_c05240 0.32 +0.9
519,214 - PGA1_c05240 0.32 -2.0
519,214 - PGA1_c05240 0.32 -0.6
519,233 + PGA1_c05240 0.34 +0.7
519,256 + PGA1_c05240 0.36 +0.3
519,264 - PGA1_c05240 0.37 -0.2
519,264 - PGA1_c05240 0.37 -0.1
519,264 - PGA1_c05240 0.37 +0.8
519,264 - PGA1_c05240 0.37 -0.2
519,273 + PGA1_c05240 0.38 +0.6
519,306 - PGA1_c05240 0.41 +0.6
519,328 - PGA1_c05240 0.43 +0.4
519,342 + PGA1_c05240 0.44 +0.6
519,347 + PGA1_c05240 0.44 +0.8
519,434 - PGA1_c05240 0.52 +0.2
519,455 + PGA1_c05240 0.54 +0.6

Or see this region's nucleotide sequence