Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05160

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05150 and PGA1_c05160 are separated by 144 nucleotidesPGA1_c05160 and PGA1_c05170 overlap by 11 nucleotidesPGA1_c05170 and PGA1_c05180 are separated by 156 nucleotidesPGA1_c05180 and PGA1_c05190 overlap by 1 nucleotides PGA1_c05150: PGA1_c05150 - chemoreceptor McpA, at 508,360 to 510,642 _c05150 PGA1_c05160: PGA1_c05160 - peptidase M56-like protein, at 510,787 to 511,938 _c05160 PGA1_c05170: PGA1_c05170 - penicillinase repressor blaI/mecI-like protein, at 511,928 to 512,323 _c05170 PGA1_c05180: PGA1_c05180 - Predicted small integral membrane protein, at 512,480 to 512,758 _c05180 PGA1_c05190: PGA1_c05190 - ABC transporter, inner membrane component, at 512,758 to 513,555 _c05190 Position (kb) 510 511 512Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 509.825 kb on - strand, within PGA1_c05150at 509.847 kb on + strand, within PGA1_c05150at 509.855 kb on - strand, within PGA1_c05150at 509.875 kb on - strand, within PGA1_c05150at 509.875 kb on - strand, within PGA1_c05150at 509.988 kb on + strand, within PGA1_c05150at 510.008 kb on + strand, within PGA1_c05150at 510.008 kb on + strand, within PGA1_c05150at 510.020 kb on - strand, within PGA1_c05150at 510.044 kb on + strand, within PGA1_c05150at 510.052 kb on - strand, within PGA1_c05150at 510.157 kb on + strand, within PGA1_c05150at 510.163 kb on - strand, within PGA1_c05150at 510.217 kb on - strand, within PGA1_c05150at 510.217 kb on - strand, within PGA1_c05150at 510.258 kb on + strand, within PGA1_c05150at 510.354 kb on + strand, within PGA1_c05150at 510.355 kb on + strand, within PGA1_c05150at 510.373 kb on - strand, within PGA1_c05150at 510.445 kb on - strandat 510.463 kb on - strandat 510.544 kb on - strandat 510.602 kb on + strandat 510.633 kb on - strandat 510.643 kb on + strandat 510.651 kb on - strandat 510.686 kb on + strandat 510.690 kb on - strandat 510.849 kb on - strandat 510.866 kb on + strandat 510.957 kb on - strand, within PGA1_c05160at 510.967 kb on - strand, within PGA1_c05160at 510.992 kb on - strand, within PGA1_c05160at 511.030 kb on - strand, within PGA1_c05160at 511.193 kb on - strand, within PGA1_c05160at 511.193 kb on - strand, within PGA1_c05160at 511.381 kb on - strand, within PGA1_c05160at 511.416 kb on - strand, within PGA1_c05160at 511.479 kb on - strand, within PGA1_c05160at 511.479 kb on - strand, within PGA1_c05160at 511.510 kb on - strand, within PGA1_c05160at 511.567 kb on - strand, within PGA1_c05160at 511.603 kb on - strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.646 kb on - strand, within PGA1_c05160at 511.646 kb on - strand, within PGA1_c05160at 511.664 kb on + strand, within PGA1_c05160at 511.725 kb on - strand, within PGA1_c05160at 511.725 kb on - strand, within PGA1_c05160at 511.772 kb on - strand, within PGA1_c05160at 511.822 kb on - strand, within PGA1_c05160at 511.897 kb on + strandat 511.913 kb on - strandat 512.040 kb on + strand, within PGA1_c05170at 512.040 kb on + strand, within PGA1_c05170at 512.042 kb on + strand, within PGA1_c05170at 512.071 kb on - strand, within PGA1_c05170at 512.099 kb on - strand, within PGA1_c05170at 512.104 kb on - strand, within PGA1_c05170at 512.104 kb on - strand, within PGA1_c05170at 512.280 kb on + strand, within PGA1_c05170at 512.292 kb on + strandat 512.306 kb on + strandat 512.332 kb on + strandat 512.340 kb on - strandat 512.354 kb on - strandat 512.354 kb on - strandat 512.355 kb on - strandat 512.355 kb on - strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.365 kb on - strandat 512.365 kb on - strandat 512.365 kb on - strandat 512.367 kb on - strandat 512.400 kb on + strandat 512.400 kb on + strandat 512.408 kb on - strandat 512.420 kb on + strandat 512.430 kb on + strandat 512.430 kb on + strandat 512.443 kb on - strandat 512.457 kb on - strandat 512.467 kb on + strandat 512.554 kb on + strand, within PGA1_c05180at 512.562 kb on - strand, within PGA1_c05180at 512.562 kb on - strand, within PGA1_c05180at 512.562 kb on - strand, within PGA1_c05180at 512.591 kb on - strand, within PGA1_c05180at 512.648 kb on - strand, within PGA1_c05180at 512.725 kb on - strand, within PGA1_c05180at 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.736 kb on + strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.865 kb on + strand, within PGA1_c05190at 512.873 kb on - strand, within PGA1_c05190at 512.901 kb on - strand, within PGA1_c05190at 512.936 kb on + strand, within PGA1_c05190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
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509,825 - PGA1_c05150 0.64 +0.5
509,847 + PGA1_c05150 0.65 +0.0
509,855 - PGA1_c05150 0.65 -0.9
509,875 - PGA1_c05150 0.66 +0.4
509,875 - PGA1_c05150 0.66 -2.5
509,988 + PGA1_c05150 0.71 +0.0
510,008 + PGA1_c05150 0.72 -0.5
510,008 + PGA1_c05150 0.72 +0.8
510,020 - PGA1_c05150 0.73 +0.6
510,044 + PGA1_c05150 0.74 +0.1
510,052 - PGA1_c05150 0.74 +1.0
510,157 + PGA1_c05150 0.79 -0.9
510,163 - PGA1_c05150 0.79 +1.1
510,217 - PGA1_c05150 0.81 +0.8
510,217 - PGA1_c05150 0.81 +0.4
510,258 + PGA1_c05150 0.83 +1.3
510,354 + PGA1_c05150 0.87 -1.7
510,355 + PGA1_c05150 0.87 -0.3
510,373 - PGA1_c05150 0.88 -0.7
510,445 - -0.1
510,463 - +1.1
510,544 - -0.8
510,602 + +0.3
510,633 - +0.7
510,643 + -2.8
510,651 - -0.7
510,686 + -0.5
510,690 - -0.0
510,849 - +0.4
510,866 + -1.1
510,957 - PGA1_c05160 0.15 -0.9
510,967 - PGA1_c05160 0.16 -1.8
510,992 - PGA1_c05160 0.18 +1.0
511,030 - PGA1_c05160 0.21 -0.2
511,193 - PGA1_c05160 0.35 +0.6
511,193 - PGA1_c05160 0.35 -0.4
511,381 - PGA1_c05160 0.52 -0.2
511,416 - PGA1_c05160 0.55 -0.9
511,479 - PGA1_c05160 0.60 +0.9
511,479 - PGA1_c05160 0.60 +0.3
511,510 - PGA1_c05160 0.63 -0.1
511,567 - PGA1_c05160 0.68 -1.2
511,603 - PGA1_c05160 0.71 -1.9
511,638 + PGA1_c05160 0.74 -0.5
511,638 + PGA1_c05160 0.74 -1.3
511,638 + PGA1_c05160 0.74 +0.6
511,646 - PGA1_c05160 0.75 -0.5
511,646 - PGA1_c05160 0.75 -0.9
511,664 + PGA1_c05160 0.76 -1.1
511,725 - PGA1_c05160 0.81 -1.9
511,725 - PGA1_c05160 0.81 -0.7
511,772 - PGA1_c05160 0.86 +0.4
511,822 - PGA1_c05160 0.90 -0.8
511,897 + -1.4
511,913 - -1.0
512,040 + PGA1_c05170 0.28 +0.5
512,040 + PGA1_c05170 0.28 +0.1
512,042 + PGA1_c05170 0.29 -0.4
512,071 - PGA1_c05170 0.36 +0.8
512,099 - PGA1_c05170 0.43 +1.1
512,104 - PGA1_c05170 0.44 +0.5
512,104 - PGA1_c05170 0.44 +1.2
512,280 + PGA1_c05170 0.89 -0.1
512,292 + +2.4
512,306 + +1.2
512,332 + +0.5
512,340 - +0.2
512,354 - -0.2
512,354 - -0.2
512,355 - +1.4
512,355 - +1.1
512,357 + +0.5
512,357 + -1.5
512,357 + +0.9
512,357 + +1.6
512,357 + +0.3
512,357 + +1.1
512,357 + -0.1
512,357 + +1.7
512,365 - +0.9
512,365 - +0.6
512,365 - -0.6
512,367 - -0.3
512,400 + +0.9
512,400 + +0.4
512,408 - -0.7
512,420 + +0.2
512,430 + -0.8
512,430 + +0.9
512,443 - -2.1
512,457 - +0.5
512,467 + +1.3
512,554 + PGA1_c05180 0.27 +0.5
512,562 - PGA1_c05180 0.29 +0.2
512,562 - PGA1_c05180 0.29 -1.3
512,562 - PGA1_c05180 0.29 -0.3
512,591 - PGA1_c05180 0.40 +2.4
512,648 - PGA1_c05180 0.60 -0.5
512,725 - PGA1_c05180 0.88 +1.1
512,735 + -1.9
512,735 + +0.0
512,735 + -0.4
512,735 + -1.4
512,735 + -1.3
512,735 + -0.7
512,735 + +1.3
512,735 + +2.9
512,735 + +0.0
512,735 + +0.4
512,736 + +0.6
512,743 - -0.3
512,743 - +1.7
512,743 - +0.2
512,743 - +0.1
512,743 - +0.7
512,743 - +0.5
512,743 - +0.9
512,755 + +0.9
512,755 + +0.4
512,755 + -1.6
512,755 + -0.2
512,755 + +0.1
512,865 + PGA1_c05190 0.13 -2.4
512,873 - PGA1_c05190 0.14 +0.2
512,901 - PGA1_c05190 0.18 +0.1
512,936 + PGA1_c05190 0.22 +0.4

Or see this region's nucleotide sequence