Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00400

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00390 and PGA1_78p00400 are separated by 269 nucleotidesPGA1_78p00400 and PGA1_78p00410 are separated by 364 nucleotides PGA1_78p00390: PGA1_78p00390 - periplasmic binding protein, at 46,190 to 47,173 _78p00390 PGA1_78p00400: PGA1_78p00400 - tonB dependent receptor, at 47,443 to 49,437 _78p00400 PGA1_78p00410: PGA1_78p00410 - putative siderophore biosynthesis protein, at 49,802 to 51,634 _78p00410 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -1 0 1 2 3at 46.684 kb on - strand, within PGA1_78p00390at 47.046 kb on - strand, within PGA1_78p00390at 47.719 kb on - strand, within PGA1_78p00400at 48.176 kb on - strandat 48.216 kb on - strand, within PGA1_78p00400at 48.418 kb on + strand, within PGA1_78p00400at 48.533 kb on - strand, within PGA1_78p00400at 48.695 kb on + strand, within PGA1_78p00400at 48.737 kb on + strand, within PGA1_78p00400at 49.461 kb on + strandat 49.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
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46,684 - PGA1_78p00390 0.50 +1.2
47,046 - PGA1_78p00390 0.87 +0.1
47,719 - PGA1_78p00400 0.14 -0.7
48,176 - -0.7
48,216 - PGA1_78p00400 0.39 -0.3
48,418 + PGA1_78p00400 0.49 +0.3
48,533 - PGA1_78p00400 0.55 +1.1
48,695 + PGA1_78p00400 0.63 -0.1
48,737 + PGA1_78p00400 0.65 +3.2
49,461 + -0.2
49,583 - +0.9

Or see this region's nucleotide sequence