Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03960 and PGA1_c03970 are separated by 198 nucleotides PGA1_c03970 and PGA1_c03980 are separated by 129 nucleotides PGA1_c03980 and PGA1_c03990 are separated by 64 nucleotides
PGA1_c03960: PGA1_c03960 - ribose import ATP-binding protein RbsA, at 382,758 to 384,287
_c03960
PGA1_c03970: PGA1_c03970 - putative lipoprotein, at 384,486 to 385,481
_c03970
PGA1_c03980: PGA1_c03980 - putative acetyltransferase, at 385,611 to 386,027
_c03980
PGA1_c03990: PGA1_c03990 - putative peptidase M22, at 386,092 to 386,688
_c03990
Position (kb) 384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 383.494 kb on + strand, within PGA1_c03960 at 383.502 kb on - strand, within PGA1_c03960 at 383.556 kb on + strand, within PGA1_c03960 at 383.564 kb on + strand, within PGA1_c03960 at 383.572 kb on - strand, within PGA1_c03960 at 383.631 kb on + strand, within PGA1_c03960 at 383.639 kb on - strand, within PGA1_c03960 at 383.687 kb on + strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.697 kb on + strand, within PGA1_c03960 at 383.730 kb on - strand, within PGA1_c03960 at 383.733 kb on + strand, within PGA1_c03960 at 383.748 kb on - strand, within PGA1_c03960 at 383.756 kb on - strand, within PGA1_c03960 at 383.779 kb on + strand, within PGA1_c03960 at 383.814 kb on + strand, within PGA1_c03960 at 383.943 kb on - strand, within PGA1_c03960 at 383.958 kb on - strand, within PGA1_c03960 at 384.016 kb on + strand, within PGA1_c03960 at 384.024 kb on - strand, within PGA1_c03960 at 384.024 kb on - strand, within PGA1_c03960 at 384.025 kb on - strand, within PGA1_c03960 at 384.118 kb on + strand, within PGA1_c03960 at 384.126 kb on - strand, within PGA1_c03960 at 384.130 kb on + strand, within PGA1_c03960 at 384.139 kb on + strand at 384.157 kb on - strand at 384.200 kb on + strand at 384.208 kb on - strand at 384.222 kb on - strand at 384.228 kb on + strand at 384.228 kb on + strand at 384.229 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.242 kb on - strand at 384.247 kb on - strand at 384.293 kb on - strand at 384.303 kb on - strand at 384.304 kb on - strand at 384.325 kb on + strand at 384.328 kb on - strand at 384.472 kb on + strand at 384.519 kb on + strand at 384.525 kb on + strand at 384.533 kb on - strand at 384.572 kb on - strand at 384.640 kb on + strand, within PGA1_c03970 at 384.648 kb on - strand, within PGA1_c03970 at 384.648 kb on - strand, within PGA1_c03970 at 384.659 kb on - strand, within PGA1_c03970 at 384.668 kb on - strand, within PGA1_c03970 at 384.677 kb on + strand, within PGA1_c03970 at 384.685 kb on - strand, within PGA1_c03970 at 384.698 kb on + strand, within PGA1_c03970 at 384.736 kb on + strand, within PGA1_c03970 at 384.857 kb on + strand, within PGA1_c03970 at 384.890 kb on + strand, within PGA1_c03970 at 384.891 kb on - strand, within PGA1_c03970 at 384.897 kb on + strand, within PGA1_c03970 at 384.898 kb on - strand, within PGA1_c03970 at 384.898 kb on - strand, within PGA1_c03970 at 384.898 kb on - strand, within PGA1_c03970 at 384.955 kb on + strand, within PGA1_c03970 at 385.035 kb on + strand, within PGA1_c03970 at 385.048 kb on - strand, within PGA1_c03970 at 385.089 kb on + strand, within PGA1_c03970 at 385.097 kb on - strand, within PGA1_c03970 at 385.133 kb on - strand, within PGA1_c03970 at 385.133 kb on - strand, within PGA1_c03970 at 385.278 kb on - strand, within PGA1_c03970 at 385.293 kb on - strand, within PGA1_c03970 at 385.325 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.338 kb on - strand, within PGA1_c03970 at 385.338 kb on - strand, within PGA1_c03970 at 385.338 kb on - strand, within PGA1_c03970 at 385.355 kb on - strand, within PGA1_c03970 at 385.391 kb on + strand at 385.461 kb on - strand at 385.476 kb on + strand at 385.476 kb on + strand at 385.484 kb on - strand at 385.518 kb on + strand at 385.525 kb on - strand at 385.534 kb on - strand at 385.535 kb on - strand at 385.535 kb on - strand at 385.573 kb on + strand at 385.574 kb on - strand at 385.591 kb on - strand at 385.591 kb on - strand at 385.621 kb on - strand at 385.621 kb on - strand at 385.621 kb on - strand at 385.637 kb on + strand at 385.645 kb on + strand at 385.645 kb on + strand at 385.645 kb on + strand at 385.645 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.653 kb on - strand, within PGA1_c03980 at 385.653 kb on - strand, within PGA1_c03980 at 385.655 kb on - strand, within PGA1_c03980 at 385.655 kb on - strand, within PGA1_c03980 at 385.659 kb on + strand, within PGA1_c03980 at 385.667 kb on - strand, within PGA1_c03980 at 385.685 kb on + strand, within PGA1_c03980 at 385.693 kb on - strand, within PGA1_c03980 at 385.726 kb on + strand, within PGA1_c03980 at 385.836 kb on - strand, within PGA1_c03980 at 385.836 kb on - strand, within PGA1_c03980 at 385.838 kb on + strand, within PGA1_c03980 at 385.852 kb on + strand, within PGA1_c03980 at 385.858 kb on + strand, within PGA1_c03980 at 385.872 kb on + strand, within PGA1_c03980 at 385.934 kb on + strand, within PGA1_c03980 at 385.961 kb on - strand, within PGA1_c03980 at 386.021 kb on + strand at 386.024 kb on - strand at 386.071 kb on + strand at 386.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM remove 383,494 + PGA1_c03960 0.48 -2.8 383,502 - PGA1_c03960 0.49 -0.9 383,556 + PGA1_c03960 0.52 -0.9 383,564 + PGA1_c03960 0.53 -1.5 383,572 - PGA1_c03960 0.53 -1.4 383,631 + PGA1_c03960 0.57 -0.9 383,639 - PGA1_c03960 0.58 -0.9 383,687 + PGA1_c03960 0.61 -0.5 383,695 - PGA1_c03960 0.61 -1.0 383,695 - PGA1_c03960 0.61 -3.1 383,695 - PGA1_c03960 0.61 -0.5 383,697 + PGA1_c03960 0.61 -1.4 383,730 - PGA1_c03960 0.64 -2.2 383,733 + PGA1_c03960 0.64 -1.7 383,748 - PGA1_c03960 0.65 -2.2 383,756 - PGA1_c03960 0.65 -0.9 383,779 + PGA1_c03960 0.67 +0.8 383,814 + PGA1_c03960 0.69 -0.6 383,943 - PGA1_c03960 0.77 +0.6 383,958 - PGA1_c03960 0.78 -3.3 384,016 + PGA1_c03960 0.82 -0.6 384,024 - PGA1_c03960 0.83 -2.8 384,024 - PGA1_c03960 0.83 -2.7 384,025 - PGA1_c03960 0.83 -3.2 384,118 + PGA1_c03960 0.89 -2.4 384,126 - PGA1_c03960 0.89 -1.3 384,130 + PGA1_c03960 0.90 -1.4 384,139 + -1.4 384,157 - -0.7 384,200 + -0.5 384,208 - -0.8 384,222 - +1.2 384,228 + -2.9 384,228 + -0.2 384,229 + -0.8 384,239 + -1.2 384,239 + -0.4 384,239 + -1.6 384,239 + -0.8 384,239 + -0.5 384,239 + -0.9 384,242 - -2.7 384,247 - -1.5 384,293 - -2.4 384,303 - +0.1 384,304 - -0.4 384,325 + -0.8 384,328 - -0.8 384,472 + -1.7 384,519 + -0.2 384,525 + -2.1 384,533 - -1.1 384,572 - +0.6 384,640 + PGA1_c03970 0.15 -2.5 384,648 - PGA1_c03970 0.16 -0.9 384,648 - PGA1_c03970 0.16 -1.0 384,659 - PGA1_c03970 0.17 -1.8 384,668 - PGA1_c03970 0.18 -1.0 384,677 + PGA1_c03970 0.19 -1.0 384,685 - PGA1_c03970 0.20 -2.8 384,698 + PGA1_c03970 0.21 -0.2 384,736 + PGA1_c03970 0.25 -1.4 384,857 + PGA1_c03970 0.37 -1.5 384,890 + PGA1_c03970 0.41 -1.7 384,891 - PGA1_c03970 0.41 +0.1 384,897 + PGA1_c03970 0.41 -2.1 384,898 - PGA1_c03970 0.41 -0.4 384,898 - PGA1_c03970 0.41 -0.2 384,898 - PGA1_c03970 0.41 -1.6 384,955 + PGA1_c03970 0.47 -1.4 385,035 + PGA1_c03970 0.55 -0.4 385,048 - PGA1_c03970 0.56 +0.2 385,089 + PGA1_c03970 0.61 -1.7 385,097 - PGA1_c03970 0.61 -2.2 385,133 - PGA1_c03970 0.65 +0.1 385,133 - PGA1_c03970 0.65 -1.4 385,278 - PGA1_c03970 0.80 -1.4 385,293 - PGA1_c03970 0.81 -0.4 385,325 + PGA1_c03970 0.84 -1.2 385,330 + PGA1_c03970 0.85 -1.0 385,330 + PGA1_c03970 0.85 +0.1 385,330 + PGA1_c03970 0.85 -2.9 385,330 + PGA1_c03970 0.85 -1.3 385,338 - PGA1_c03970 0.86 -2.5 385,338 - PGA1_c03970 0.86 -0.7 385,338 - PGA1_c03970 0.86 -0.8 385,355 - PGA1_c03970 0.87 -1.0 385,391 + -2.7 385,461 - -1.8 385,476 + -0.2 385,476 + -1.9 385,484 - -1.5 385,518 + -0.9 385,525 - -0.3 385,534 - -0.5 385,535 - -1.9 385,535 - -1.2 385,573 + -1.6 385,574 - -1.9 385,591 - -1.2 385,591 - -0.2 385,621 - -1.5 385,621 - -0.3 385,621 - +0.5 385,637 + +0.9 385,645 + -1.8 385,645 + -1.4 385,645 + -0.7 385,645 + -3.4 385,647 + -0.1 385,647 + +0.7 385,647 + +0.9 385,647 + -0.7 385,647 + -0.4 385,653 - PGA1_c03980 0.10 +0.1 385,653 - PGA1_c03980 0.10 +1.5 385,655 - PGA1_c03980 0.11 -1.6 385,655 - PGA1_c03980 0.11 -1.1 385,659 + PGA1_c03980 0.12 -1.2 385,667 - PGA1_c03980 0.13 +1.2 385,685 + PGA1_c03980 0.18 -0.2 385,693 - PGA1_c03980 0.20 -0.3 385,726 + PGA1_c03980 0.28 -0.5 385,836 - PGA1_c03980 0.54 +1.0 385,836 - PGA1_c03980 0.54 +0.1 385,838 + PGA1_c03980 0.54 +0.5 385,852 + PGA1_c03980 0.58 +0.1 385,858 + PGA1_c03980 0.59 -0.8 385,872 + PGA1_c03980 0.63 -1.4 385,934 + PGA1_c03980 0.77 +0.9 385,961 - PGA1_c03980 0.84 -1.9 386,021 + +0.6 386,024 - +0.7 386,071 + -0.4 386,073 - +2.0
Or see this region's nucleotide sequence