Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01870

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01860 and PGA1_262p01870 are separated by 102 nucleotidesPGA1_262p01870 and PGA1_262p01880 are separated by 174 nucleotides PGA1_262p01860: PGA1_262p01860 - putative acyl-Co-A dehydrogenase, at 205,133 to 206,911 _262p01860 PGA1_262p01870: PGA1_262p01870 - putative transcriptional regulator, AraC family, at 207,014 to 208,033 _262p01870 PGA1_262p01880: PGA1_262p01880 - mandelate racemase/ muconate lactonizing enzyme-like protein, at 208,208 to 209,401 _262p01880 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2at 206.122 kb on - strand, within PGA1_262p01860at 206.183 kb on + strand, within PGA1_262p01860at 206.188 kb on + strand, within PGA1_262p01860at 206.216 kb on + strand, within PGA1_262p01860at 206.223 kb on - strand, within PGA1_262p01860at 206.224 kb on - strand, within PGA1_262p01860at 206.224 kb on - strand, within PGA1_262p01860at 206.225 kb on + strand, within PGA1_262p01860at 206.233 kb on + strand, within PGA1_262p01860at 206.233 kb on - strand, within PGA1_262p01860at 206.233 kb on - strand, within PGA1_262p01860at 206.359 kb on - strand, within PGA1_262p01860at 206.375 kb on + strand, within PGA1_262p01860at 206.381 kb on - strand, within PGA1_262p01860at 206.516 kb on - strand, within PGA1_262p01860at 206.524 kb on + strand, within PGA1_262p01860at 206.532 kb on - strand, within PGA1_262p01860at 206.532 kb on - strand, within PGA1_262p01860at 206.591 kb on + strand, within PGA1_262p01860at 206.618 kb on - strand, within PGA1_262p01860at 206.647 kb on + strand, within PGA1_262p01860at 206.649 kb on + strand, within PGA1_262p01860at 206.649 kb on + strand, within PGA1_262p01860at 206.649 kb on + strand, within PGA1_262p01860at 206.657 kb on - strand, within PGA1_262p01860at 206.657 kb on - strand, within PGA1_262p01860at 206.659 kb on + strand, within PGA1_262p01860at 206.667 kb on - strand, within PGA1_262p01860at 206.683 kb on + strand, within PGA1_262p01860at 206.683 kb on + strand, within PGA1_262p01860at 206.691 kb on - strand, within PGA1_262p01860at 206.748 kb on + strandat 206.802 kb on - strandat 206.820 kb on + strandat 206.820 kb on + strandat 206.828 kb on - strandat 206.881 kb on - strandat 206.888 kb on + strandat 206.896 kb on - strandat 207.026 kb on + strandat 207.039 kb on + strandat 207.052 kb on - strandat 207.252 kb on - strand, within PGA1_262p01870at 207.420 kb on + strand, within PGA1_262p01870at 207.486 kb on + strand, within PGA1_262p01870at 207.521 kb on + strand, within PGA1_262p01870at 207.553 kb on + strand, within PGA1_262p01870at 207.553 kb on + strand, within PGA1_262p01870at 207.561 kb on - strand, within PGA1_262p01870at 207.654 kb on + strand, within PGA1_262p01870at 207.654 kb on + strand, within PGA1_262p01870at 207.686 kb on + strand, within PGA1_262p01870at 207.694 kb on - strand, within PGA1_262p01870at 207.711 kb on + strand, within PGA1_262p01870at 207.716 kb on - strand, within PGA1_262p01870at 207.719 kb on - strand, within PGA1_262p01870at 207.721 kb on + strand, within PGA1_262p01870at 207.721 kb on + strand, within PGA1_262p01870at 207.721 kb on + strand, within PGA1_262p01870at 207.721 kb on + strand, within PGA1_262p01870at 207.721 kb on + strand, within PGA1_262p01870at 207.729 kb on - strand, within PGA1_262p01870at 207.771 kb on + strand, within PGA1_262p01870at 207.798 kb on + strand, within PGA1_262p01870at 207.799 kb on - strand, within PGA1_262p01870at 207.804 kb on + strand, within PGA1_262p01870at 207.806 kb on - strand, within PGA1_262p01870at 207.809 kb on + strand, within PGA1_262p01870at 207.849 kb on + strand, within PGA1_262p01870at 207.857 kb on - strand, within PGA1_262p01870at 207.872 kb on + strand, within PGA1_262p01870at 207.875 kb on - strand, within PGA1_262p01870at 207.880 kb on - strand, within PGA1_262p01870at 207.910 kb on - strand, within PGA1_262p01870at 207.933 kb on + strandat 207.979 kb on - strandat 207.988 kb on + strandat 207.988 kb on + strandat 207.996 kb on - strandat 208.004 kb on - strandat 208.004 kb on - strandat 208.055 kb on - strandat 208.076 kb on - strandat 208.114 kb on - strandat 208.130 kb on - strandat 208.135 kb on - strandat 208.147 kb on + strandat 208.155 kb on - strandat 208.155 kb on - strandat 208.189 kb on - strandat 208.192 kb on + strandat 208.195 kb on + strandat 208.203 kb on - strandat 208.210 kb on - strandat 208.257 kb on + strandat 208.257 kb on + strandat 208.257 kb on + strandat 208.257 kb on + strandat 208.257 kb on + strandat 208.262 kb on + strandat 208.262 kb on + strandat 208.262 kb on + strandat 208.262 kb on + strandat 208.262 kb on + strandat 208.262 kb on + strandat 208.265 kb on - strandat 208.270 kb on - strandat 208.270 kb on - strandat 208.270 kb on - strandat 208.290 kb on + strandat 208.297 kb on + strandat 208.300 kb on + strandat 208.300 kb on + strandat 208.308 kb on - strandat 208.313 kb on - strandat 208.314 kb on + strandat 208.324 kb on + strandat 208.329 kb on + strand, within PGA1_262p01880at 208.332 kb on - strand, within PGA1_262p01880at 208.378 kb on + strand, within PGA1_262p01880at 208.384 kb on + strand, within PGA1_262p01880at 208.385 kb on + strand, within PGA1_262p01880at 208.385 kb on + strand, within PGA1_262p01880at 208.385 kb on + strand, within PGA1_262p01880at 208.385 kb on + strand, within PGA1_262p01880at 208.385 kb on + strand, within PGA1_262p01880at 208.393 kb on - strand, within PGA1_262p01880at 208.393 kb on - strand, within PGA1_262p01880at 208.393 kb on - strand, within PGA1_262p01880at 208.393 kb on - strand, within PGA1_262p01880at 208.431 kb on - strand, within PGA1_262p01880at 208.469 kb on - strand, within PGA1_262p01880at 208.479 kb on - strand, within PGA1_262p01880at 208.538 kb on + strand, within PGA1_262p01880at 208.624 kb on + strand, within PGA1_262p01880at 208.660 kb on - strand, within PGA1_262p01880at 208.660 kb on - strand, within PGA1_262p01880at 208.662 kb on + strand, within PGA1_262p01880at 208.662 kb on + strand, within PGA1_262p01880at 208.670 kb on - strand, within PGA1_262p01880at 208.670 kb on - strand, within PGA1_262p01880at 208.675 kb on + strand, within PGA1_262p01880at 208.675 kb on + strand, within PGA1_262p01880at 208.675 kb on + strand, within PGA1_262p01880at 208.683 kb on - strand, within PGA1_262p01880at 208.683 kb on - strand, within PGA1_262p01880at 208.725 kb on - strand, within PGA1_262p01880at 208.735 kb on + strand, within PGA1_262p01880at 208.735 kb on + strand, within PGA1_262p01880at 208.735 kb on + strand, within PGA1_262p01880at 208.743 kb on - strand, within PGA1_262p01880at 208.743 kb on - strand, within PGA1_262p01880at 208.743 kb on - strand, within PGA1_262p01880at 208.743 kb on - strand, within PGA1_262p01880at 208.828 kb on - strand, within PGA1_262p01880at 208.829 kb on + strand, within PGA1_262p01880at 208.870 kb on + strand, within PGA1_262p01880

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
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206,122 - PGA1_262p01860 0.56 +0.8
206,183 + PGA1_262p01860 0.59 +1.8
206,188 + PGA1_262p01860 0.59 +0.6
206,216 + PGA1_262p01860 0.61 +1.1
206,223 - PGA1_262p01860 0.61 +0.1
206,224 - PGA1_262p01860 0.61 -0.3
206,224 - PGA1_262p01860 0.61 +0.1
206,225 + PGA1_262p01860 0.61 -0.1
206,233 + PGA1_262p01860 0.62 -1.0
206,233 - PGA1_262p01860 0.62 +0.4
206,233 - PGA1_262p01860 0.62 +0.8
206,359 - PGA1_262p01860 0.69 +0.7
206,375 + PGA1_262p01860 0.70 -0.8
206,381 - PGA1_262p01860 0.70 +0.8
206,516 - PGA1_262p01860 0.78 -0.1
206,524 + PGA1_262p01860 0.78 -0.8
206,532 - PGA1_262p01860 0.79 +1.1
206,532 - PGA1_262p01860 0.79 -0.4
206,591 + PGA1_262p01860 0.82 +0.0
206,618 - PGA1_262p01860 0.83 -0.5
206,647 + PGA1_262p01860 0.85 +1.8
206,649 + PGA1_262p01860 0.85 +0.2
206,649 + PGA1_262p01860 0.85 +1.4
206,649 + PGA1_262p01860 0.85 -0.6
206,657 - PGA1_262p01860 0.86 +0.2
206,657 - PGA1_262p01860 0.86 +0.9
206,659 + PGA1_262p01860 0.86 +0.0
206,667 - PGA1_262p01860 0.86 -0.8
206,683 + PGA1_262p01860 0.87 -2.2
206,683 + PGA1_262p01860 0.87 -0.2
206,691 - PGA1_262p01860 0.88 -0.2
206,748 + +1.1
206,802 - -2.0
206,820 + -0.3
206,820 + -0.9
206,828 - +0.1
206,881 - +1.0
206,888 + +0.2
206,896 - +0.5
207,026 + +0.3
207,039 + -0.6
207,052 - +0.2
207,252 - PGA1_262p01870 0.23 -1.2
207,420 + PGA1_262p01870 0.40 -1.0
207,486 + PGA1_262p01870 0.46 -2.2
207,521 + PGA1_262p01870 0.50 -1.4
207,553 + PGA1_262p01870 0.53 -0.1
207,553 + PGA1_262p01870 0.53 -0.4
207,561 - PGA1_262p01870 0.54 -0.8
207,654 + PGA1_262p01870 0.63 +0.7
207,654 + PGA1_262p01870 0.63 +0.1
207,686 + PGA1_262p01870 0.66 -1.1
207,694 - PGA1_262p01870 0.67 -0.3
207,711 + PGA1_262p01870 0.68 +0.2
207,716 - PGA1_262p01870 0.69 +1.4
207,719 - PGA1_262p01870 0.69 -2.5
207,721 + PGA1_262p01870 0.69 -0.6
207,721 + PGA1_262p01870 0.69 -0.3
207,721 + PGA1_262p01870 0.69 -0.8
207,721 + PGA1_262p01870 0.69 -0.2
207,721 + PGA1_262p01870 0.69 -0.1
207,729 - PGA1_262p01870 0.70 -0.8
207,771 + PGA1_262p01870 0.74 +0.0
207,798 + PGA1_262p01870 0.77 +0.5
207,799 - PGA1_262p01870 0.77 +0.3
207,804 + PGA1_262p01870 0.77 -0.3
207,806 - PGA1_262p01870 0.78 +0.1
207,809 + PGA1_262p01870 0.78 -0.4
207,849 + PGA1_262p01870 0.82 -0.9
207,857 - PGA1_262p01870 0.83 -0.6
207,872 + PGA1_262p01870 0.84 -1.6
207,875 - PGA1_262p01870 0.84 -0.1
207,880 - PGA1_262p01870 0.85 -0.3
207,910 - PGA1_262p01870 0.88 -1.3
207,933 + +0.6
207,979 - +0.2
207,988 + -0.2
207,988 + -0.4
207,996 - +0.1
208,004 - +0.8
208,004 - +0.2
208,055 - -0.1
208,076 - +1.2
208,114 - -1.2
208,130 - +0.3
208,135 - -0.7
208,147 + -1.0
208,155 - -0.7
208,155 - +1.0
208,189 - +0.9
208,192 + +1.1
208,195 + +0.3
208,203 - +0.9
208,210 - -1.0
208,257 + -0.9
208,257 + +1.0
208,257 + +0.5
208,257 + +0.4
208,257 + +0.9
208,262 + +1.8
208,262 + +0.2
208,262 + +0.8
208,262 + +0.0
208,262 + -1.5
208,262 + -0.5
208,265 - -0.6
208,270 - -0.4
208,270 - +0.8
208,270 - +0.5
208,290 + +0.5
208,297 + +1.5
208,300 + +0.1
208,300 + +1.8
208,308 - +0.2
208,313 - -0.9
208,314 + +0.1
208,324 + -0.3
208,329 + PGA1_262p01880 0.10 -0.4
208,332 - PGA1_262p01880 0.10 -1.4
208,378 + PGA1_262p01880 0.14 +0.6
208,384 + PGA1_262p01880 0.15 -0.3
208,385 + PGA1_262p01880 0.15 +0.7
208,385 + PGA1_262p01880 0.15 -0.9
208,385 + PGA1_262p01880 0.15 -0.4
208,385 + PGA1_262p01880 0.15 -0.6
208,385 + PGA1_262p01880 0.15 -1.9
208,393 - PGA1_262p01880 0.15 -0.1
208,393 - PGA1_262p01880 0.15 +0.9
208,393 - PGA1_262p01880 0.15 -0.3
208,393 - PGA1_262p01880 0.15 +0.7
208,431 - PGA1_262p01880 0.19 +1.8
208,469 - PGA1_262p01880 0.22 -0.4
208,479 - PGA1_262p01880 0.23 +0.2
208,538 + PGA1_262p01880 0.28 +0.2
208,624 + PGA1_262p01880 0.35 -0.3
208,660 - PGA1_262p01880 0.38 -0.3
208,660 - PGA1_262p01880 0.38 +1.3
208,662 + PGA1_262p01880 0.38 +0.6
208,662 + PGA1_262p01880 0.38 +0.7
208,670 - PGA1_262p01880 0.39 +1.0
208,670 - PGA1_262p01880 0.39 +0.5
208,675 + PGA1_262p01880 0.39 +0.2
208,675 + PGA1_262p01880 0.39 -1.4
208,675 + PGA1_262p01880 0.39 +0.3
208,683 - PGA1_262p01880 0.40 +0.7
208,683 - PGA1_262p01880 0.40 +0.2
208,725 - PGA1_262p01880 0.43 -0.4
208,735 + PGA1_262p01880 0.44 -0.6
208,735 + PGA1_262p01880 0.44 -0.2
208,735 + PGA1_262p01880 0.44 +0.9
208,743 - PGA1_262p01880 0.45 +0.8
208,743 - PGA1_262p01880 0.45 +0.1
208,743 - PGA1_262p01880 0.45 -0.1
208,743 - PGA1_262p01880 0.45 +0.1
208,828 - PGA1_262p01880 0.52 -0.4
208,829 + PGA1_262p01880 0.52 -0.2
208,870 + PGA1_262p01880 0.55 +0.4

Or see this region's nucleotide sequence