Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01480 and PGA1_262p01490 are separated by 32 nucleotides PGA1_262p01490 and PGA1_262p01500 overlap by 8 nucleotides
PGA1_262p01480: PGA1_262p01480 - transcriptional regulator, AraC family, at 161,529 to 162,536
_262p01480
PGA1_262p01490: PGA1_262p01490 - putative sarcosine oxidase, gamma subunit, at 162,569 to 163,132
_262p01490
PGA1_262p01500: PGA1_262p01500 - sarcosine oxidase subunit alpha, at 163,125 to 166,091
_262p01500
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.591 kb on - strand at 161.613 kb on - strand at 162.040 kb on + strand, within PGA1_262p01480 at 162.267 kb on - strand, within PGA1_262p01480 at 162.312 kb on - strand, within PGA1_262p01480 at 162.317 kb on - strand, within PGA1_262p01480 at 162.588 kb on + strand at 162.588 kb on + strand at 162.694 kb on - strand, within PGA1_262p01490 at 162.740 kb on + strand, within PGA1_262p01490 at 162.917 kb on - strand, within PGA1_262p01490 at 162.917 kb on - strand, within PGA1_262p01490 at 163.116 kb on - strand at 163.136 kb on + strand at 163.246 kb on + strand at 163.302 kb on + strand at 163.310 kb on - strand at 163.436 kb on - strand, within PGA1_262p01500 at 163.576 kb on - strand, within PGA1_262p01500 at 163.592 kb on - strand, within PGA1_262p01500 at 163.729 kb on + strand, within PGA1_262p01500 at 163.731 kb on - strand, within PGA1_262p01500 at 163.827 kb on + strand, within PGA1_262p01500 at 163.848 kb on + strand, within PGA1_262p01500 at 163.885 kb on + strand, within PGA1_262p01500 at 164.021 kb on + strand, within PGA1_262p01500
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM remove 161,591 - -0.0 161,613 - -1.0 162,040 + PGA1_262p01480 0.51 +0.3 162,267 - PGA1_262p01480 0.73 +0.6 162,312 - PGA1_262p01480 0.78 +0.4 162,317 - PGA1_262p01480 0.78 +0.5 162,588 + +0.3 162,588 + -0.0 162,694 - PGA1_262p01490 0.22 +0.1 162,740 + PGA1_262p01490 0.30 -1.1 162,917 - PGA1_262p01490 0.62 -2.2 162,917 - PGA1_262p01490 0.62 -0.4 163,116 - +0.1 163,136 + +1.1 163,246 + -0.3 163,302 + +1.8 163,310 - +0.8 163,436 - PGA1_262p01500 0.10 +0.2 163,576 - PGA1_262p01500 0.15 +0.5 163,592 - PGA1_262p01500 0.16 -0.1 163,729 + PGA1_262p01500 0.20 +0.2 163,731 - PGA1_262p01500 0.20 -0.1 163,827 + PGA1_262p01500 0.24 -0.9 163,848 + PGA1_262p01500 0.24 -0.8 163,885 + PGA1_262p01500 0.26 -2.4 164,021 + PGA1_262p01500 0.30 -0.3
Or see this region's nucleotide sequence