Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02110 and PGA1_c02120 are separated by 164 nucleotides PGA1_c02120 and PGA1_c02130 are separated by 5 nucleotides PGA1_c02130 and PGA1_c02140 are separated by 99 nucleotides PGA1_c02140 and PGA1_c02150 are separated by 26 nucleotides
PGA1_c02110: PGA1_c02110 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 194,519 to 195,406
_c02110
PGA1_c02120: PGA1_c02120 - hypothetical protein, at 195,571 to 196,143
_c02120
PGA1_c02130: PGA1_c02130 - conserved hypothetical protein YidD, at 196,149 to 196,421
_c02130
PGA1_c02140: PGA1_c02140 - putative ribonuclease P component, at 196,521 to 196,973
_c02140
PGA1_c02150: PGA1_c02150 - 50S ribosomal protein L34, at 197,000 to 197,134
_c02150
Position (kb) 196
197 Strain fitness (log2 ratio) -2
-1
0
1
2 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.210 kb on + strand, within PGA1_c02110 at 195.210 kb on + strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.218 kb on + strand, within PGA1_c02110 at 195.255 kb on - strand, within PGA1_c02110 at 195.272 kb on + strand, within PGA1_c02110 at 195.415 kb on - strand at 195.475 kb on - strand at 195.486 kb on - strand at 195.530 kb on + strand at 195.556 kb on + strand at 195.556 kb on + strand at 195.562 kb on + strand at 195.562 kb on + strand at 195.564 kb on - strand at 195.570 kb on - strand at 195.617 kb on + strand at 195.672 kb on + strand, within PGA1_c02120 at 195.768 kb on + strand, within PGA1_c02120 at 195.768 kb on + strand, within PGA1_c02120 at 195.776 kb on - strand, within PGA1_c02120 at 195.776 kb on - strand, within PGA1_c02120 at 195.776 kb on - strand, within PGA1_c02120 at 195.778 kb on + strand, within PGA1_c02120 at 195.778 kb on + strand, within PGA1_c02120 at 195.786 kb on - strand, within PGA1_c02120 at 195.786 kb on - strand, within PGA1_c02120 at 195.788 kb on + strand, within PGA1_c02120 at 195.796 kb on - strand, within PGA1_c02120 at 195.821 kb on + strand, within PGA1_c02120 at 195.821 kb on + strand, within PGA1_c02120 at 195.821 kb on + strand, within PGA1_c02120 at 195.829 kb on - strand, within PGA1_c02120 at 195.829 kb on - strand, within PGA1_c02120 at 195.829 kb on - strand, within PGA1_c02120 at 195.857 kb on - strand, within PGA1_c02120 at 195.866 kb on + strand, within PGA1_c02120 at 195.891 kb on + strand, within PGA1_c02120 at 195.942 kb on - strand, within PGA1_c02120 at 195.971 kb on - strand, within PGA1_c02120 at 195.979 kb on - strand, within PGA1_c02120 at 196.060 kb on + strand, within PGA1_c02120 at 196.084 kb on + strand, within PGA1_c02120 at 196.100 kb on + strand at 196.108 kb on - strand at 196.118 kb on - strand at 196.127 kb on + strand at 196.147 kb on + strand at 196.198 kb on - strand, within PGA1_c02130 at 196.211 kb on - strand, within PGA1_c02130 at 196.360 kb on + strand, within PGA1_c02130 at 196.373 kb on + strand, within PGA1_c02130 at 196.417 kb on + strand at 196.423 kb on - strand at 196.448 kb on + strand at 196.466 kb on - strand at 196.495 kb on - strand at 196.504 kb on + strand at 196.504 kb on + strand at 196.504 kb on + strand at 196.512 kb on - strand at 196.977 kb on + strand at 197.335 kb on + strand at 197.368 kb on + strand at 197.370 kb on - strand at 197.376 kb on - strand at 197.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM remove 195,208 + PGA1_c02110 0.78 -0.4 195,208 + PGA1_c02110 0.78 +1.2 195,208 + PGA1_c02110 0.78 -0.7 195,208 + PGA1_c02110 0.78 +0.6 195,208 + PGA1_c02110 0.78 +0.1 195,208 + PGA1_c02110 0.78 +0.3 195,208 + PGA1_c02110 0.78 +0.1 195,208 + PGA1_c02110 0.78 +1.6 195,208 + PGA1_c02110 0.78 -0.3 195,208 + PGA1_c02110 0.78 -0.6 195,208 + PGA1_c02110 0.78 +0.3 195,208 + PGA1_c02110 0.78 +0.2 195,208 + PGA1_c02110 0.78 -1.0 195,208 + PGA1_c02110 0.78 -0.5 195,208 + PGA1_c02110 0.78 -0.0 195,208 + PGA1_c02110 0.78 -1.3 195,208 + PGA1_c02110 0.78 +0.4 195,208 + PGA1_c02110 0.78 -0.1 195,208 + PGA1_c02110 0.78 +0.2 195,208 + PGA1_c02110 0.78 +0.2 195,208 + PGA1_c02110 0.78 +0.6 195,210 + PGA1_c02110 0.78 -0.1 195,210 + PGA1_c02110 0.78 -1.3 195,216 - PGA1_c02110 0.78 -0.4 195,216 - PGA1_c02110 0.78 -0.7 195,216 - PGA1_c02110 0.78 -0.5 195,216 - PGA1_c02110 0.78 -0.9 195,216 - PGA1_c02110 0.78 -0.3 195,216 - PGA1_c02110 0.78 +0.0 195,216 - PGA1_c02110 0.78 +0.7 195,216 - PGA1_c02110 0.78 +0.6 195,216 - PGA1_c02110 0.78 -1.1 195,216 - PGA1_c02110 0.78 -2.0 195,216 - PGA1_c02110 0.78 -0.7 195,216 - PGA1_c02110 0.78 +0.1 195,216 - PGA1_c02110 0.78 -0.4 195,216 - PGA1_c02110 0.78 -0.1 195,216 - PGA1_c02110 0.78 +0.3 195,216 - PGA1_c02110 0.78 +0.1 195,216 - PGA1_c02110 0.78 +0.5 195,216 - PGA1_c02110 0.78 +1.6 195,216 - PGA1_c02110 0.78 +1.3 195,216 - PGA1_c02110 0.78 +1.1 195,216 - PGA1_c02110 0.78 +0.9 195,216 - PGA1_c02110 0.78 +0.6 195,216 - PGA1_c02110 0.78 -0.8 195,216 - PGA1_c02110 0.78 +0.1 195,216 - PGA1_c02110 0.78 -1.3 195,216 - PGA1_c02110 0.78 +1.9 195,216 - PGA1_c02110 0.78 +0.8 195,216 - PGA1_c02110 0.78 +0.5 195,216 - PGA1_c02110 0.78 +1.1 195,216 - PGA1_c02110 0.78 +0.1 195,218 + PGA1_c02110 0.79 -0.9 195,255 - PGA1_c02110 0.83 +0.3 195,272 + PGA1_c02110 0.85 +0.3 195,415 - +0.2 195,475 - -0.6 195,486 - -2.4 195,530 + +0.1 195,556 + -0.5 195,556 + -1.7 195,562 + +0.9 195,562 + -1.0 195,564 - +0.7 195,570 - +0.4 195,617 + +1.0 195,672 + PGA1_c02120 0.18 +0.5 195,768 + PGA1_c02120 0.34 +0.9 195,768 + PGA1_c02120 0.34 -0.4 195,776 - PGA1_c02120 0.36 -2.2 195,776 - PGA1_c02120 0.36 -2.0 195,776 - PGA1_c02120 0.36 +1.0 195,778 + PGA1_c02120 0.36 -0.4 195,778 + PGA1_c02120 0.36 -1.7 195,786 - PGA1_c02120 0.38 +0.5 195,786 - PGA1_c02120 0.38 +0.7 195,788 + PGA1_c02120 0.38 +0.7 195,796 - PGA1_c02120 0.39 -2.0 195,821 + PGA1_c02120 0.44 +0.6 195,821 + PGA1_c02120 0.44 +1.0 195,821 + PGA1_c02120 0.44 +1.3 195,829 - PGA1_c02120 0.45 +0.3 195,829 - PGA1_c02120 0.45 +0.9 195,829 - PGA1_c02120 0.45 +0.9 195,857 - PGA1_c02120 0.50 +0.1 195,866 + PGA1_c02120 0.51 +0.0 195,891 + PGA1_c02120 0.56 +2.0 195,942 - PGA1_c02120 0.65 +0.4 195,971 - PGA1_c02120 0.70 +1.1 195,979 - PGA1_c02120 0.71 +1.4 196,060 + PGA1_c02120 0.85 +0.1 196,084 + PGA1_c02120 0.90 -0.9 196,100 + -0.4 196,108 - +0.1 196,118 - +0.7 196,127 + +0.4 196,147 + -1.1 196,198 - PGA1_c02130 0.18 -0.7 196,211 - PGA1_c02130 0.23 -0.2 196,360 + PGA1_c02130 0.77 -1.0 196,373 + PGA1_c02130 0.82 -0.1 196,417 + +0.8 196,423 - -0.9 196,448 + +0.6 196,466 - -1.0 196,495 - -1.1 196,504 + +2.1 196,504 + -0.0 196,504 + +0.3 196,512 - -0.8 196,977 + +0.3 197,335 + -0.9 197,368 + -0.6 197,370 - -1.0 197,376 - +0.6 197,412 - -0.3
Or see this region's nucleotide sequence