Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01930 and PGA1_c01940 are separated by 135 nucleotides PGA1_c01940 and PGA1_c01950 are separated by 11 nucleotides
PGA1_c01930: PGA1_c01930 - replication-associated recombination protein A, at 176,082 to 177,404
_c01930
PGA1_c01940: PGA1_c01940 - crcB-like protein, at 177,540 to 177,920
_c01940
PGA1_c01950: PGA1_c01950 - ribosomal large subunit pseudouridine synthase C, at 177,932 to 178,963
_c01950
Position (kb) 177
178 Strain fitness (log2 ratio) -2
-1
0
1 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.579 kb on + strand, within PGA1_c01930 at 176.651 kb on - strand, within PGA1_c01930 at 176.656 kb on + strand, within PGA1_c01930 at 176.789 kb on - strand, within PGA1_c01930 at 176.861 kb on + strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.900 kb on + strand, within PGA1_c01930 at 177.031 kb on - strand, within PGA1_c01930 at 177.034 kb on + strand, within PGA1_c01930 at 177.074 kb on + strand, within PGA1_c01930 at 177.177 kb on + strand, within PGA1_c01930 at 177.224 kb on + strand, within PGA1_c01930 at 177.233 kb on - strand, within PGA1_c01930 at 177.320 kb on - strand at 177.393 kb on + strand at 177.431 kb on - strand at 177.564 kb on + strand at 177.564 kb on + strand at 177.633 kb on - strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.728 kb on - strand, within PGA1_c01940 at 178.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM remove 176,562 + PGA1_c01930 0.36 +0.2 176,562 + PGA1_c01930 0.36 +0.5 176,562 + PGA1_c01930 0.36 +0.5 176,562 + PGA1_c01930 0.36 +0.9 176,562 + PGA1_c01930 0.36 -0.3 176,562 + PGA1_c01930 0.36 +0.9 176,570 - PGA1_c01930 0.37 +0.2 176,570 - PGA1_c01930 0.37 -1.4 176,579 + PGA1_c01930 0.38 +1.1 176,651 - PGA1_c01930 0.43 +0.9 176,656 + PGA1_c01930 0.43 +0.2 176,789 - PGA1_c01930 0.53 -0.9 176,861 + PGA1_c01930 0.59 -0.3 176,869 - PGA1_c01930 0.59 -1.4 176,869 - PGA1_c01930 0.59 +0.3 176,869 - PGA1_c01930 0.59 +0.4 176,869 - PGA1_c01930 0.59 -0.3 176,869 - PGA1_c01930 0.59 +0.1 176,869 - PGA1_c01930 0.59 +0.4 176,869 - PGA1_c01930 0.59 +0.0 176,878 + PGA1_c01930 0.60 +1.1 176,878 + PGA1_c01930 0.60 -0.6 176,878 + PGA1_c01930 0.60 -1.1 176,886 - PGA1_c01930 0.61 +1.3 176,886 - PGA1_c01930 0.61 +0.3 176,900 + PGA1_c01930 0.62 +1.7 177,031 - PGA1_c01930 0.72 -0.9 177,034 + PGA1_c01930 0.72 -0.6 177,074 + PGA1_c01930 0.75 -0.2 177,177 + PGA1_c01930 0.83 +1.7 177,224 + PGA1_c01930 0.86 -0.9 177,233 - PGA1_c01930 0.87 -1.0 177,320 - -0.3 177,393 + +0.2 177,431 - +1.0 177,564 + +0.4 177,564 + +1.7 177,633 - PGA1_c01940 0.24 -2.0 177,720 + PGA1_c01940 0.47 -0.1 177,720 + PGA1_c01940 0.47 +0.2 177,720 + PGA1_c01940 0.47 -1.1 177,728 - PGA1_c01940 0.49 -1.1 178,917 + -1.7
Or see this region's nucleotide sequence