Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01830

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01820 and PGA1_c01830 are separated by 147 nucleotidesPGA1_c01830 and PGA1_c01840 are separated by 593 nucleotides PGA1_c01820: PGA1_c01820 - Predicted permeases, at 166,389 to 167,333 _c01820 PGA1_c01830: PGA1_c01830 - Uncharacterized conserved small protein, at 167,481 to 167,696 _c01830 PGA1_c01840: PGA1_c01840 - transmembrane ion channel-domain containing protein, at 168,290 to 168,802 _c01840 Position (kb) 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.494 kb on - strand, within PGA1_c01820at 166.513 kb on + strand, within PGA1_c01820at 166.521 kb on - strand, within PGA1_c01820at 166.521 kb on - strand, within PGA1_c01820at 166.546 kb on - strand, within PGA1_c01820at 166.555 kb on + strand, within PGA1_c01820at 166.590 kb on - strand, within PGA1_c01820at 166.592 kb on - strand, within PGA1_c01820at 166.660 kb on + strand, within PGA1_c01820at 166.686 kb on - strand, within PGA1_c01820at 166.693 kb on + strand, within PGA1_c01820at 166.693 kb on + strand, within PGA1_c01820at 166.701 kb on - strand, within PGA1_c01820at 166.701 kb on - strand, within PGA1_c01820at 166.703 kb on + strand, within PGA1_c01820at 166.739 kb on - strand, within PGA1_c01820at 166.744 kb on - strand, within PGA1_c01820at 166.744 kb on - strand, within PGA1_c01820at 166.744 kb on - strand, within PGA1_c01820at 166.758 kb on - strand, within PGA1_c01820at 166.766 kb on - strand, within PGA1_c01820at 166.766 kb on - strand, within PGA1_c01820at 166.795 kb on + strand, within PGA1_c01820at 166.821 kb on - strand, within PGA1_c01820at 166.831 kb on - strand, within PGA1_c01820at 166.835 kb on + strand, within PGA1_c01820at 166.929 kb on - strand, within PGA1_c01820at 166.942 kb on + strand, within PGA1_c01820at 166.972 kb on - strand, within PGA1_c01820at 166.979 kb on + strand, within PGA1_c01820at 166.983 kb on + strand, within PGA1_c01820at 166.996 kb on - strand, within PGA1_c01820at 167.026 kb on + strand, within PGA1_c01820at 167.040 kb on - strand, within PGA1_c01820at 167.049 kb on + strand, within PGA1_c01820at 167.063 kb on - strand, within PGA1_c01820at 167.132 kb on + strand, within PGA1_c01820at 167.132 kb on + strand, within PGA1_c01820at 167.132 kb on + strand, within PGA1_c01820at 167.140 kb on - strand, within PGA1_c01820at 167.140 kb on - strand, within PGA1_c01820at 167.140 kb on - strand, within PGA1_c01820at 167.165 kb on + strand, within PGA1_c01820at 167.191 kb on - strand, within PGA1_c01820at 167.193 kb on + strand, within PGA1_c01820at 167.196 kb on - strand, within PGA1_c01820at 167.233 kb on + strand, within PGA1_c01820at 167.233 kb on + strand, within PGA1_c01820at 167.233 kb on + strand, within PGA1_c01820at 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.309 kb on - strandat 167.309 kb on - strandat 167.309 kb on - strandat 167.309 kb on - strandat 167.319 kb on - strandat 167.353 kb on - strandat 167.366 kb on + strandat 167.366 kb on + strandat 167.471 kb on + strandat 167.487 kb on - strandat 167.528 kb on - strand, within PGA1_c01830at 167.558 kb on + strand, within PGA1_c01830at 167.593 kb on - strand, within PGA1_c01830at 167.596 kb on + strand, within PGA1_c01830at 167.623 kb on - strand, within PGA1_c01830at 167.744 kb on + strandat 167.910 kb on + strandat 167.929 kb on + strandat 167.942 kb on - strandat 167.952 kb on + strandat 167.960 kb on - strandat 167.960 kb on - strandat 167.960 kb on - strandat 168.018 kb on - strandat 168.042 kb on + strandat 168.048 kb on + strandat 168.048 kb on + strandat 168.089 kb on - strandat 168.089 kb on - strandat 168.113 kb on + strandat 168.113 kb on + strandat 168.113 kb on + strandat 168.115 kb on + strandat 168.121 kb on - strandat 168.123 kb on - strandat 168.138 kb on - strandat 168.219 kb on + strandat 168.272 kb on + strandat 168.376 kb on - strand, within PGA1_c01840at 168.430 kb on + strand, within PGA1_c01840at 168.435 kb on + strand, within PGA1_c01840at 168.435 kb on + strand, within PGA1_c01840at 168.443 kb on - strand, within PGA1_c01840at 168.452 kb on + strand, within PGA1_c01840at 168.482 kb on + strand, within PGA1_c01840at 168.482 kb on + strand, within PGA1_c01840at 168.490 kb on - strand, within PGA1_c01840at 168.491 kb on + strand, within PGA1_c01840at 168.497 kb on + strand, within PGA1_c01840at 168.499 kb on - strand, within PGA1_c01840at 168.499 kb on - strand, within PGA1_c01840at 168.505 kb on - strand, within PGA1_c01840at 168.511 kb on + strand, within PGA1_c01840at 168.519 kb on - strand, within PGA1_c01840at 168.519 kb on - strand, within PGA1_c01840at 168.543 kb on + strand, within PGA1_c01840at 168.543 kb on + strand, within PGA1_c01840at 168.548 kb on + strand, within PGA1_c01840at 168.548 kb on - strand, within PGA1_c01840at 168.551 kb on - strand, within PGA1_c01840at 168.551 kb on - strand, within PGA1_c01840at 168.551 kb on - strand, within PGA1_c01840at 168.551 kb on - strand, within PGA1_c01840at 168.607 kb on + strand, within PGA1_c01840at 168.619 kb on + strand, within PGA1_c01840at 168.626 kb on - strand, within PGA1_c01840at 168.664 kb on + strand, within PGA1_c01840at 168.664 kb on + strand, within PGA1_c01840at 168.664 kb on + strand, within PGA1_c01840at 168.664 kb on + strand, within PGA1_c01840at 168.672 kb on - strand, within PGA1_c01840at 168.672 kb on - strand, within PGA1_c01840at 168.688 kb on + strand, within PGA1_c01840

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
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166,494 - PGA1_c01820 0.11 -1.0
166,513 + PGA1_c01820 0.13 -1.7
166,521 - PGA1_c01820 0.14 +0.4
166,521 - PGA1_c01820 0.14 +1.1
166,546 - PGA1_c01820 0.17 +1.4
166,555 + PGA1_c01820 0.18 +0.1
166,590 - PGA1_c01820 0.21 +0.7
166,592 - PGA1_c01820 0.21 +0.7
166,660 + PGA1_c01820 0.29 +0.4
166,686 - PGA1_c01820 0.31 -0.3
166,693 + PGA1_c01820 0.32 -0.4
166,693 + PGA1_c01820 0.32 +0.6
166,701 - PGA1_c01820 0.33 -2.8
166,701 - PGA1_c01820 0.33 -0.5
166,703 + PGA1_c01820 0.33 +0.9
166,739 - PGA1_c01820 0.37 -0.7
166,744 - PGA1_c01820 0.38 +0.5
166,744 - PGA1_c01820 0.38 -0.3
166,744 - PGA1_c01820 0.38 -0.7
166,758 - PGA1_c01820 0.39 -0.7
166,766 - PGA1_c01820 0.40 +0.1
166,766 - PGA1_c01820 0.40 -0.7
166,795 + PGA1_c01820 0.43 -0.2
166,821 - PGA1_c01820 0.46 +0.3
166,831 - PGA1_c01820 0.47 +0.7
166,835 + PGA1_c01820 0.47 -1.1
166,929 - PGA1_c01820 0.57 +0.6
166,942 + PGA1_c01820 0.59 +0.0
166,972 - PGA1_c01820 0.62 +2.5
166,979 + PGA1_c01820 0.62 -0.5
166,983 + PGA1_c01820 0.63 -0.9
166,996 - PGA1_c01820 0.64 +0.3
167,026 + PGA1_c01820 0.67 +1.1
167,040 - PGA1_c01820 0.69 -0.7
167,049 + PGA1_c01820 0.70 +1.6
167,063 - PGA1_c01820 0.71 -0.9
167,132 + PGA1_c01820 0.79 +0.7
167,132 + PGA1_c01820 0.79 -0.6
167,132 + PGA1_c01820 0.79 -0.1
167,140 - PGA1_c01820 0.79 -0.1
167,140 - PGA1_c01820 0.79 -0.3
167,140 - PGA1_c01820 0.79 -0.3
167,165 + PGA1_c01820 0.82 -0.1
167,191 - PGA1_c01820 0.85 -0.3
167,193 + PGA1_c01820 0.85 +1.0
167,196 - PGA1_c01820 0.85 +0.5
167,233 + PGA1_c01820 0.89 +0.8
167,233 + PGA1_c01820 0.89 +0.2
167,233 + PGA1_c01820 0.89 +0.9
167,301 + -0.1
167,301 + +0.6
167,301 + -0.7
167,301 + +1.7
167,301 + -0.3
167,301 + +0.7
167,309 - -1.9
167,309 - +0.1
167,309 - +0.0
167,309 - +0.9
167,319 - +0.0
167,353 - -2.4
167,366 + -0.6
167,366 + -1.3
167,471 + -0.1
167,487 - -1.6
167,528 - PGA1_c01830 0.22 -1.9
167,558 + PGA1_c01830 0.36 -1.0
167,593 - PGA1_c01830 0.52 -0.9
167,596 + PGA1_c01830 0.53 -1.6
167,623 - PGA1_c01830 0.66 -3.2
167,744 + +0.6
167,910 + +0.3
167,929 + +0.6
167,942 - -1.4
167,952 + +0.1
167,960 - -0.4
167,960 - -0.4
167,960 - +0.4
168,018 - +0.3
168,042 + -0.2
168,048 + -0.6
168,048 + -1.9
168,089 - +0.8
168,089 - -3.2
168,113 + +1.5
168,113 + -0.1
168,113 + +0.9
168,115 + +0.4
168,121 - +0.8
168,123 - -1.4
168,138 - -1.2
168,219 + -0.3
168,272 + +0.9
168,376 - PGA1_c01840 0.17 -1.9
168,430 + PGA1_c01840 0.27 +1.3
168,435 + PGA1_c01840 0.28 -0.6
168,435 + PGA1_c01840 0.28 +0.2
168,443 - PGA1_c01840 0.30 +0.3
168,452 + PGA1_c01840 0.32 +0.8
168,482 + PGA1_c01840 0.37 -1.1
168,482 + PGA1_c01840 0.37 +0.1
168,490 - PGA1_c01840 0.39 +1.7
168,491 + PGA1_c01840 0.39 -0.2
168,497 + PGA1_c01840 0.40 -0.4
168,499 - PGA1_c01840 0.41 +0.6
168,499 - PGA1_c01840 0.41 +1.1
168,505 - PGA1_c01840 0.42 +0.8
168,511 + PGA1_c01840 0.43 -0.3
168,519 - PGA1_c01840 0.45 -0.6
168,519 - PGA1_c01840 0.45 -0.0
168,543 + PGA1_c01840 0.49 +0.5
168,543 + PGA1_c01840 0.49 +1.4
168,548 + PGA1_c01840 0.50 -0.7
168,548 - PGA1_c01840 0.50 +0.6
168,551 - PGA1_c01840 0.51 -0.1
168,551 - PGA1_c01840 0.51 +0.7
168,551 - PGA1_c01840 0.51 +0.5
168,551 - PGA1_c01840 0.51 +0.2
168,607 + PGA1_c01840 0.62 -1.4
168,619 + PGA1_c01840 0.64 -0.7
168,626 - PGA1_c01840 0.65 -1.7
168,664 + PGA1_c01840 0.73 -0.5
168,664 + PGA1_c01840 0.73 -0.6
168,664 + PGA1_c01840 0.73 +0.4
168,664 + PGA1_c01840 0.73 -0.2
168,672 - PGA1_c01840 0.74 +0.3
168,672 - PGA1_c01840 0.74 -0.3
168,688 + PGA1_c01840 0.78 -0.7

Or see this region's nucleotide sequence