Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16170

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
1,676,453	-		PGA1_c16150	0.61	-0.8
1,676,462	+		PGA1_c16150	0.62	-0.1
1,676,591	-		PGA1_c16150	0.74	+0.1
1,676,672	-		PGA1_c16150	0.81	+0.1
1,676,778	-				-0.1
1,676,946	+				-0.3
1,676,987	+				-0.2
1,677,038	+		PGA1_c16160	0.15	-0.4
1,677,058	-		PGA1_c16160	0.20	-1.0
1,677,080	+		PGA1_c16160	0.25	+0.4
1,677,088	-		PGA1_c16160	0.27	-0.3
1,677,093	-		PGA1_c16160	0.28	-0.9
1,677,093	-		PGA1_c16160	0.28	-0.4
1,677,093	-		PGA1_c16160	0.28	+1.0
1,677,093	-		PGA1_c16160	0.28	-1.5
1,677,093	-		PGA1_c16160	0.28	-0.2
1,677,123	+		PGA1_c16160	0.35	+0.8
1,677,132	-		PGA1_c16160	0.37	+0.3
1,677,153	-		PGA1_c16160	0.42	-0.5
1,677,172	+		PGA1_c16160	0.46	-0.5
1,677,412	-				+1.0
1,677,527	-				-1.8
1,677,546	-				-1.2
1,677,563	+				+0.9
1,677,635	+				-1.5
1,677,654	+				+0.2
1,677,697	+		PGA1_c16170	0.11	+0.3
1,677,720	-		PGA1_c16170	0.12	+0.3
1,677,807	+		PGA1_c16170	0.16	-1.3
1,677,849	+		PGA1_c16170	0.17	-0.1
1,677,859	+		PGA1_c16170	0.18	-0.8
1,677,859	+		PGA1_c16170	0.18	-2.2
1,677,859	+		PGA1_c16170	0.18	+1.0
1,677,936	-		PGA1_c16170	0.20	-0.2
1,677,988	-		PGA1_c16170	0.22	-1.0
1,678,042	+		PGA1_c16170	0.25	-0.4
1,678,290	+		PGA1_c16170	0.34	-2.2
1,678,298	-		PGA1_c16170	0.34	+1.3
1,678,369	+		PGA1_c16170	0.37	-1.2
1,678,399	+		PGA1_c16170	0.38	-0.4
1,678,436	+		PGA1_c16170	0.40	-0.6
1,678,821	-		PGA1_c16170	0.54	-0.2
1,678,924	+		PGA1_c16170	0.58	-0.7
1,678,948	+		PGA1_c16170	0.59	+0.5
1,678,956	-		PGA1_c16170	0.60	-2.9
1,678,986	+		PGA1_c16170	0.61	-1.5
1,678,986	+		PGA1_c16170	0.61	+1.0
1,678,986	+		PGA1_c16170	0.61	+0.7
1,679,152	+		PGA1_c16170	0.67	+0.3
1,679,152	+		PGA1_c16170	0.67	-1.4
1,679,160	-		PGA1_c16170	0.67	-2.5
1,679,261	-		PGA1_c16170	0.71	-0.2
1,679,283	+		PGA1_c16170	0.72	-0.7
1,679,283	+		PGA1_c16170	0.72	-0.4
1,679,301	-		PGA1_c16170	0.73	-1.5
1,679,334	+		PGA1_c16170	0.74	+0.1
1,679,342	-		PGA1_c16170	0.74	-1.0
1,679,438	-		PGA1_c16170	0.78	-0.7
1,679,477	+		PGA1_c16170	0.80	-1.5
1,679,556	-		PGA1_c16170	0.83	-2.9
1,679,556	-		PGA1_c16170	0.83	-0.9
1,679,621	+		PGA1_c16170	0.85	-1.7
1,679,714	-		PGA1_c16170	0.89	-0.5
1,679,836	+				-0.2
1,679,852	+				-0.3
1,679,862	+				-0.3
1,680,058	+				-1.4
1,680,119	+				-1.5
1,680,120	+				-0.7
1,680,166	+				+0.2
1,680,176	+				+1.3
1,680,176	+				+2.3
1,680,194	-				+1.3
1,680,196	+				-1.5
1,680,196	+				-1.2
1,680,199	-				-1.0
1,680,209	-				+1.3
1,680,274	+				+0.2
1,680,282	-				-0.7
1,680,289	+		PGA1_c16180	0.10	+0.3
1,680,341	+		PGA1_c16180	0.16	-0.7
1,680,342	-		PGA1_c16180	0.16	-2.2
1,680,388	+		PGA1_c16180	0.21	+0.3
1,680,574	+		PGA1_c16180	0.40	-1.1
1,680,574	+		PGA1_c16180	0.40	-1.7
1,680,574	+		PGA1_c16180	0.40	-0.9
1,680,582	-		PGA1_c16180	0.41	-0.9
1,680,582	-		PGA1_c16180	0.41	-0.4
1,680,604	-		PGA1_c16180	0.43	-1.0
1,680,689	-		PGA1_c16180	0.52	-1.8
1,680,799	+		PGA1_c16180	0.63	+0.0
1,680,950	-		PGA1_c16180	0.79	-2.1