Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15380

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15370 and PGA1_c15380 are separated by 294 nucleotidesPGA1_c15380 and PGA1_c15390 are separated by 66 nucleotidesPGA1_c15390 and PGA1_c15400 are separated by 0 nucleotides PGA1_c15370: PGA1_c15370 - protein SufB, at 1,600,655 to 1,602,178 _c15370 PGA1_c15380: PGA1_c15380 - Uncharacterized conserved protein, at 1,602,473 to 1,602,787 _c15380 PGA1_c15390: PGA1_c15390 - FeS assembly ATPase SufC, at 1,602,854 to 1,603,609 _c15390 PGA1_c15400: PGA1_c15400 - protein SufD, at 1,603,610 to 1,604,890 _c15400 Position (kb) 1602 1603Strain fitness (log2 ratio) -2 -1 0 1at 1602.229 kb on - strandat 1602.235 kb on + strandat 1602.236 kb on + strandat 1602.244 kb on - strandat 1602.260 kb on + strandat 1602.265 kb on + strandat 1602.288 kb on + strandat 1602.292 kb on + strandat 1602.310 kb on - strandat 1602.324 kb on + strandat 1602.728 kb on + strand, within PGA1_c15380

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
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1,602,229 - -0.6
1,602,235 + -0.1
1,602,236 + +0.9
1,602,244 - -0.5
1,602,260 + -2.0
1,602,265 + -0.2
1,602,288 + +0.9
1,602,292 + -0.6
1,602,310 - +0.5
1,602,324 + -0.3
1,602,728 + PGA1_c15380 0.81 -0.6

Or see this region's nucleotide sequence