Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01480 and PGA1_c01490 are separated by 414 nucleotides PGA1_c01490 and PGA1_c01500 are separated by 15 nucleotides PGA1_c01500 and PGA1_c01510 are separated by 18 nucleotides
PGA1_c01480: PGA1_c01480 - Protein of unknown function (DUF3118)., at 144,467 to 145,243
_c01480
PGA1_c01490: PGA1_c01490 - 30S ribosomal protein S12, at 145,658 to 146,029
_c01490
PGA1_c01500: PGA1_c01500 - 30S ribosomal protein S7, at 146,045 to 146,515
_c01500
PGA1_c01510: PGA1_c01510 - elongation factor G, at 146,534 to 148,654
_c01510
Position (kb) 146
147 Strain fitness (log2 ratio) -2
-1
0
1 at 145.102 kb on - strand, within PGA1_c01480 at 145.102 kb on - strand, within PGA1_c01480 at 145.146 kb on + strand, within PGA1_c01480 at 145.149 kb on - strand, within PGA1_c01480 at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.178 kb on + strand at 145.230 kb on + strand at 145.230 kb on + strand at 145.230 kb on + strand at 145.238 kb on - strand at 145.254 kb on - strand at 145.273 kb on + strand at 145.273 kb on + strand at 145.273 kb on + strand at 145.273 kb on + strand at 145.273 kb on + strand at 145.281 kb on - strand at 145.296 kb on + strand at 145.304 kb on - strand at 145.311 kb on - strand at 145.351 kb on - strand at 145.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM remove 145,102 - PGA1_c01480 0.82 -0.1 145,102 - PGA1_c01480 0.82 -0.4 145,146 + PGA1_c01480 0.87 -0.1 145,149 - PGA1_c01480 0.88 +0.1 145,168 + -0.6 145,168 + -0.3 145,168 + +0.1 145,168 + -1.4 145,168 + -0.7 145,168 + +0.0 145,168 + -1.0 145,168 + +0.7 145,176 - -0.2 145,176 - -0.5 145,176 - +0.2 145,176 - -0.9 145,176 - -0.7 145,176 - -1.1 145,178 + +0.9 145,230 + +0.4 145,230 + -0.4 145,230 + +0.1 145,238 - -0.7 145,254 - -0.6 145,273 + -0.6 145,273 + -1.9 145,273 + +0.3 145,273 + -0.1 145,273 + +0.1 145,281 - +0.2 145,296 + +0.2 145,304 - +1.1 145,311 - +1.2 145,351 - +0.5 145,394 - +0.1
Or see this region's nucleotide sequence