Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13180

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
1,362,885	+		PGA1_c13160	0.90	-0.4
1,362,915	-				+0.2
1,362,969	-				+0.0
1,362,981	-				-1.0
1,362,990	-				-1.6
1,362,995	+				+0.6
1,363,052	-				+0.9
1,363,057	-				-0.3
1,363,098	+				-1.0
1,363,098	+				+0.3
1,363,098	+				-0.4
1,363,106	-				+0.7
1,363,106	-				+0.2
1,363,106	-				+1.3
1,363,107	-				-2.3
1,363,107	-				+0.3
1,363,131	+				-0.7
1,363,160	+		PGA1_c13170	0.12	+0.4
1,363,176	-		PGA1_c13170	0.14	-0.4
1,363,225	+		PGA1_c13170	0.21	-0.9
1,363,263	+		PGA1_c13170	0.26	+0.9
1,363,263	+		PGA1_c13170	0.26	-1.7
1,363,271	-		PGA1_c13170	0.27	-0.9
1,363,271	-		PGA1_c13170	0.27	-0.2
1,363,271	-		PGA1_c13170	0.27	-0.2
1,363,342	-		PGA1_c13170	0.36	-0.2
1,363,351	+		PGA1_c13170	0.37	+1.0
1,363,444	+		PGA1_c13170	0.49	+0.7
1,363,472	-		PGA1_c13170	0.53	-1.6
1,363,543	+		PGA1_c13170	0.62	-0.7
1,363,551	-		PGA1_c13170	0.63	+0.1
1,363,569	-		PGA1_c13170	0.65	-1.1
1,363,652	-		PGA1_c13170	0.76	-1.3
1,363,652	-		PGA1_c13170	0.76	+0.5
1,363,699	+		PGA1_c13170	0.82	-0.1
1,363,707	-		PGA1_c13170	0.83	-0.3
1,363,714	-		PGA1_c13170	0.84	-0.5
1,363,801	+				+0.4
1,363,801	+				-0.7
1,363,801	+				+1.2
1,363,801	+				+0.7
1,363,801	+				-0.1
1,363,801	+				-1.1
1,363,801	+				-0.8
1,363,809	-				-0.6
1,363,809	-				-1.2
1,363,822	+				-2.5
1,363,890	-				+0.5
1,364,093	-		PGA1_c13180	0.26	+0.3
1,364,098	-		PGA1_c13180	0.26	-0.9
1,364,169	+		PGA1_c13180	0.33	+0.1
1,364,190	+		PGA1_c13180	0.35	-0.2
1,364,190	+		PGA1_c13180	0.35	+0.0
1,364,258	-		PGA1_c13180	0.42	+0.8
1,364,349	+		PGA1_c13180	0.51	-0.9
1,364,433	+		PGA1_c13180	0.60	-0.3
1,364,433	+		PGA1_c13180	0.60	+0.3
1,364,436	-		PGA1_c13180	0.60	-2.1
1,364,441	-		PGA1_c13180	0.60	+0.6
1,364,441	-		PGA1_c13180	0.60	+0.8
1,364,482	-		PGA1_c13180	0.64	-0.2
1,364,665	+		PGA1_c13180	0.83	+0.1
1,364,681	+		PGA1_c13180	0.84	-1.1
1,364,823	+				-0.0
1,364,831	-				+0.3
1,364,831	-				-2.6
1,364,833	+				-0.2
1,364,841	-				-2.4
1,364,842	-				-0.4
1,364,869	+				+0.4
1,364,869	+				+0.2
1,364,869	+				+0.4
1,364,877	-				-0.5
1,364,877	-				-0.2
1,364,902	-				-0.7
1,364,919	-				+0.6
1,364,953	-		PGA1_c13190	0.12	-0.4
1,364,957	+		PGA1_c13190	0.13	+1.1
1,364,957	+		PGA1_c13190	0.13	-0.0
1,364,960	-		PGA1_c13190	0.13	-0.6
1,364,965	-		PGA1_c13190	0.14	-0.2
1,364,970	-		PGA1_c13190	0.14	-0.7
1,365,061	-		PGA1_c13190	0.25	-1.1
1,365,082	+		PGA1_c13190	0.28	+0.6
1,365,083	+		PGA1_c13190	0.28	+1.1
1,365,119	+		PGA1_c13190	0.32	+0.0
1,365,141	+		PGA1_c13190	0.35	+0.1
1,365,145	+		PGA1_c13190	0.35	+0.1
1,365,149	+		PGA1_c13190	0.36	+0.3
1,365,172	-		PGA1_c13190	0.39	-0.7
1,365,199	+		PGA1_c13190	0.42	+0.3
1,365,199	+		PGA1_c13190	0.42	+1.7
1,365,199	+		PGA1_c13190	0.42	+0.5
1,365,207	-		PGA1_c13190	0.43	-0.2
1,365,310	+		PGA1_c13190	0.55	+0.1
1,365,364	-		PGA1_c13190	0.62	+1.6
1,365,551	+		PGA1_c13190	0.84	+0.3
1,365,559	-		PGA1_c13190	0.85	-1.2
1,365,561	+		PGA1_c13190	0.85	-0.6
1,365,569	+		PGA1_c13190	0.86	-1.2
1,365,580	+		PGA1_c13190	0.88	-2.0
1,365,580	+		PGA1_c13190	0.88	-1.4
1,365,590	+		PGA1_c13190	0.89	+0.1
1,365,590	+		PGA1_c13190	0.89	-1.3
1,365,626	+				+0.3
1,365,626	+				+1.2
1,365,626	+				+1.4
1,365,626	+				+0.4
1,365,626	+				-0.3
1,365,626	+				-0.9
1,365,626	+				+1.5
1,365,626	+				-0.6
1,365,626	+				-1.1
1,365,634	-				-0.8
1,365,634	-				-0.1
1,365,634	-				-0.6
1,365,634	-				+0.3
1,365,634	-				-0.2
1,365,634	-				-1.3
1,365,634	-				+0.0
1,365,639	-				+0.4
1,365,649	-				-0.3
1,365,690	+				+0.9
1,365,826	+		PGA1_c13200	0.16	-0.5