Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00110

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00110 and PGA1_c00120 are separated by 184 nucleotidesPGA1_c00120 and PGA1_c00130 are separated by 25 nucleotidesPGA1_c00130 and PGA1_c00140 are separated by 420 nucleotides PGA1_c00110: PGA1_c00110 - 16S ribosomal RNA, at 13,149 to 14,600 _c00110 PGA1_c00120: PGA1_c00120 - tRNA-Ala, at 14,785 to 14,860 _c00120 PGA1_c00130: PGA1_c00130 - tRNA-Ile, at 14,886 to 14,962 _c00130 PGA1_c00140: PGA1_c00140 - 23S ribosomal RNA, at 15,383 to 18,208 _c00140 Position (kb) 13 14 15Strain fitness (log2 ratio) -1 0 1 2at 12.167 kb on + strandat 12.167 kb on + strandat 12.167 kb on + strandat 12.167 kb on + strandat 12.167 kb on + strandat 12.167 kb on + strandat 12.175 kb on - strandat 12.209 kb on + strandat 12.209 kb on + strandat 12.245 kb on + strandat 12.288 kb on + strandat 12.288 kb on + strandat 12.301 kb on - strandat 12.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 5 mM
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12,167 + -0.1
12,167 + +0.3
12,167 + +0.7
12,167 + -0.2
12,167 + +0.2
12,167 + -0.4
12,175 - -1.1
12,209 + +2.3
12,209 + +1.1
12,245 + -0.9
12,288 + -0.2
12,288 + +0.9
12,301 - -1.1
12,307 + +0.9

Or see this region's nucleotide sequence