Experiment: Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18300 and RS_RS26020 are separated by 65 nucleotides RS_RS26020 and RS_RS18305 are separated by 329 nucleotides RS_RS18305 and RS_RS18310 overlap by 4 nucleotides
RS_RS18300: RS_RS18300 - glycogen debranching enzyme GlgX, at 300,326 to 302,590
_RS18300
RS_RS26020: RS_RS26020 - hypothetical protein, at 302,656 to 302,853
_RS26020
RS_RS18305: RS_RS18305 - glycogen-branching enzyme, at 303,183 to 305,510
_RS18305
RS_RS18310: RS_RS18310 - maltose alpha-D-glucosyltransferase, at 305,507 to 308,989
_RS18310
Position (kb) 303
304
305
306 Strain fitness (log2 ratio) -2
-1
0
1
2 at 302.286 kb on + strand, within RS_RS18300 at 302.287 kb on - strand, within RS_RS18300 at 302.332 kb on - strand, within RS_RS18300 at 302.365 kb on - strand at 302.365 kb on - strand at 302.395 kb on - strand at 302.543 kb on + strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.585 kb on + strand at 303.264 kb on + strand at 303.265 kb on - strand at 303.265 kb on - strand at 303.265 kb on - strand at 303.448 kb on + strand, within RS_RS18305 at 303.541 kb on + strand, within RS_RS18305 at 303.542 kb on - strand, within RS_RS18305 at 303.868 kb on + strand, within RS_RS18305 at 303.889 kb on + strand, within RS_RS18305 at 303.889 kb on + strand, within RS_RS18305 at 303.889 kb on + strand, within RS_RS18305 at 303.890 kb on - strand, within RS_RS18305 at 303.890 kb on - strand, within RS_RS18305 at 303.890 kb on - strand, within RS_RS18305 at 303.890 kb on - strand, within RS_RS18305 at 303.928 kb on + strand, within RS_RS18305 at 303.928 kb on + strand, within RS_RS18305 at 303.928 kb on + strand, within RS_RS18305 at 303.928 kb on + strand, within RS_RS18305 at 303.928 kb on + strand, within RS_RS18305 at 303.928 kb on + strand, within RS_RS18305 at 304.121 kb on - strand, within RS_RS18305 at 304.121 kb on - strand, within RS_RS18305 at 304.240 kb on + strand, within RS_RS18305 at 304.241 kb on - strand, within RS_RS18305 at 304.241 kb on - strand, within RS_RS18305 at 304.241 kb on - strand, within RS_RS18305 at 304.295 kb on - strand, within RS_RS18305 at 304.295 kb on - strand, within RS_RS18305 at 304.466 kb on - strand, within RS_RS18305 at 304.540 kb on + strand, within RS_RS18305 at 304.541 kb on - strand, within RS_RS18305 at 304.630 kb on + strand, within RS_RS18305 at 304.630 kb on + strand, within RS_RS18305 at 304.817 kb on - strand, within RS_RS18305 at 304.817 kb on - strand, within RS_RS18305 at 304.817 kb on - strand, within RS_RS18305 at 305.634 kb on + strand at 305.634 kb on + strand at 305.634 kb on + strand at 305.634 kb on + strand at 305.634 kb on + strand at 305.635 kb on - strand at 305.635 kb on - strand at 305.635 kb on - strand at 305.646 kb on + strand at 305.739 kb on + strand at 305.739 kb on + strand at 305.856 kb on + strand, within RS_RS18310 at 305.857 kb on - strand, within RS_RS18310 at 305.959 kb on - strand, within RS_RS18310 at 305.959 kb on - strand, within RS_RS18310 at 305.959 kb on - strand, within RS_RS18310
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 302,286 + RS_RS18300 0.87 +0.1 302,287 - RS_RS18300 0.87 +0.2 302,332 - RS_RS18300 0.89 +0.6 302,365 - -0.4 302,365 - -0.7 302,395 - +0.0 302,543 + +1.9 302,551 - +1.0 302,551 - -0.8 302,585 + -0.9 303,264 + -0.3 303,265 - +0.2 303,265 - +0.0 303,265 - +0.4 303,448 + RS_RS18305 0.11 -0.1 303,541 + RS_RS18305 0.15 -0.3 303,542 - RS_RS18305 0.15 +0.5 303,868 + RS_RS18305 0.29 +0.1 303,889 + RS_RS18305 0.30 -0.8 303,889 + RS_RS18305 0.30 -0.5 303,889 + RS_RS18305 0.30 -0.4 303,890 - RS_RS18305 0.30 -1.0 303,890 - RS_RS18305 0.30 +0.7 303,890 - RS_RS18305 0.30 +0.6 303,890 - RS_RS18305 0.30 -0.4 303,928 + RS_RS18305 0.32 -0.3 303,928 + RS_RS18305 0.32 -1.0 303,928 + RS_RS18305 0.32 -1.8 303,928 + RS_RS18305 0.32 -0.7 303,928 + RS_RS18305 0.32 -0.5 303,928 + RS_RS18305 0.32 -0.4 304,121 - RS_RS18305 0.40 -2.4 304,121 - RS_RS18305 0.40 -0.6 304,240 + RS_RS18305 0.45 +0.0 304,241 - RS_RS18305 0.45 +1.0 304,241 - RS_RS18305 0.45 +0.1 304,241 - RS_RS18305 0.45 -1.5 304,295 - RS_RS18305 0.48 +0.0 304,295 - RS_RS18305 0.48 +1.0 304,466 - RS_RS18305 0.55 +1.0 304,540 + RS_RS18305 0.58 +0.4 304,541 - RS_RS18305 0.58 -1.3 304,630 + RS_RS18305 0.62 +0.1 304,630 + RS_RS18305 0.62 +0.7 304,817 - RS_RS18305 0.70 -0.6 304,817 - RS_RS18305 0.70 -0.9 304,817 - RS_RS18305 0.70 +1.0 305,634 + +0.2 305,634 + +0.4 305,634 + -0.3 305,634 + -1.1 305,634 + +0.4 305,635 - +0.1 305,635 - +0.8 305,635 - +1.0 305,646 + -0.7 305,739 + +1.7 305,739 + -0.8 305,856 + RS_RS18310 0.10 +0.5 305,857 - RS_RS18310 0.10 -1.3 305,959 - RS_RS18310 0.13 -0.6 305,959 - RS_RS18310 0.13 -0.5 305,959 - RS_RS18310 0.13 +0.1
Or see this region's nucleotide sequence