Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS16800

Experiment: Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS16795 and RS_RS16800 are separated by 35 nucleotidesRS_RS16800 and RS_RS16805 are separated by 75 nucleotidesRS_RS16805 and RS_RS16810 are separated by 139 nucleotides RS_RS16795: RS_RS16795 - ornithine cyclodeaminase, at 3,613,046 to 3,614,050 _RS16795 RS_RS16800: RS_RS16800 - lysoplasmalogenase, at 3,614,086 to 3,614,847 _RS16800 RS_RS16805: RS_RS16805 - Lrp/AsnC family transcriptional regulator, at 3,614,923 to 3,615,399 _RS16805 RS_RS16810: RS_RS16810 - phenylalanine 4-monooxygenase, at 3,615,539 to 3,616,480 _RS16810 Position (kb) 3614 3615Strain fitness (log2 ratio) -2 -1 0 1 2at 3613.184 kb on + strand, within RS_RS16795at 3613.184 kb on + strand, within RS_RS16795at 3613.185 kb on - strand, within RS_RS16795at 3613.193 kb on + strand, within RS_RS16795at 3613.193 kb on + strand, within RS_RS16795at 3613.459 kb on - strand, within RS_RS16795at 3614.004 kb on + strandat 3614.004 kb on + strandat 3614.087 kb on + strandat 3614.174 kb on + strand, within RS_RS16800at 3614.174 kb on + strand, within RS_RS16800at 3614.175 kb on - strand, within RS_RS16800at 3614.198 kb on + strand, within RS_RS16800at 3614.199 kb on - strand, within RS_RS16800at 3614.339 kb on + strand, within RS_RS16800at 3614.339 kb on + strand, within RS_RS16800at 3614.340 kb on - strand, within RS_RS16800at 3614.362 kb on + strand, within RS_RS16800at 3614.382 kb on - strand, within RS_RS16800at 3614.480 kb on + strand, within RS_RS16800at 3614.480 kb on + strand, within RS_RS16800at 3614.480 kb on + strand, within RS_RS16800at 3614.481 kb on - strand, within RS_RS16800at 3614.481 kb on - strand, within RS_RS16800at 3614.745 kb on - strand, within RS_RS16800at 3614.804 kb on + strandat 3614.982 kb on + strand, within RS_RS16805at 3614.982 kb on + strand, within RS_RS16805at 3615.080 kb on + strand, within RS_RS16805at 3615.080 kb on + strand, within RS_RS16805at 3615.080 kb on + strand, within RS_RS16805at 3615.081 kb on - strand, within RS_RS16805at 3615.081 kb on - strand, within RS_RS16805at 3615.081 kb on - strand, within RS_RS16805at 3615.104 kb on + strand, within RS_RS16805at 3615.105 kb on - strand, within RS_RS16805at 3615.105 kb on - strand, within RS_RS16805at 3615.105 kb on - strand, within RS_RS16805at 3615.498 kb on - strandat 3615.729 kb on - strand, within RS_RS16810

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
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3,613,184 + RS_RS16795 0.14 +1.4
3,613,184 + RS_RS16795 0.14 +0.3
3,613,185 - RS_RS16795 0.14 +2.1
3,613,193 + RS_RS16795 0.15 -0.0
3,613,193 + RS_RS16795 0.15 -0.5
3,613,459 - RS_RS16795 0.41 +0.5
3,614,004 + -2.0
3,614,004 + -0.3
3,614,087 + -0.8
3,614,174 + RS_RS16800 0.12 +1.3
3,614,174 + RS_RS16800 0.12 -0.2
3,614,175 - RS_RS16800 0.12 -0.2
3,614,198 + RS_RS16800 0.15 -1.3
3,614,199 - RS_RS16800 0.15 -0.4
3,614,339 + RS_RS16800 0.33 +1.3
3,614,339 + RS_RS16800 0.33 -1.6
3,614,340 - RS_RS16800 0.33 +0.3
3,614,362 + RS_RS16800 0.36 +0.2
3,614,382 - RS_RS16800 0.39 -0.0
3,614,480 + RS_RS16800 0.52 +0.7
3,614,480 + RS_RS16800 0.52 -0.5
3,614,480 + RS_RS16800 0.52 -1.9
3,614,481 - RS_RS16800 0.52 +1.3
3,614,481 - RS_RS16800 0.52 +0.1
3,614,745 - RS_RS16800 0.86 +0.5
3,614,804 + -2.7
3,614,982 + RS_RS16805 0.12 -0.2
3,614,982 + RS_RS16805 0.12 -1.3
3,615,080 + RS_RS16805 0.33 +0.5
3,615,080 + RS_RS16805 0.33 -0.3
3,615,080 + RS_RS16805 0.33 -1.0
3,615,081 - RS_RS16805 0.33 +0.9
3,615,081 - RS_RS16805 0.33 -0.8
3,615,081 - RS_RS16805 0.33 -0.2
3,615,104 + RS_RS16805 0.38 +0.4
3,615,105 - RS_RS16805 0.38 +0.8
3,615,105 - RS_RS16805 0.38 -0.1
3,615,105 - RS_RS16805 0.38 +0.2
3,615,498 - -0.1
3,615,729 - RS_RS16810 0.20 -0.1

Or see this region's nucleotide sequence