Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS07845

Experiment: Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS07835 and RS_RS07840 are separated by 12 nucleotidesRS_RS07840 and RS_RS07845 overlap by 4 nucleotidesRS_RS07845 and RS_RS07850 are separated by 76 nucleotides RS_RS07835: RS_RS07835 - FAD-binding oxidoreductase, at 1,672,034 to 1,673,446 _RS07835 RS_RS07840: RS_RS07840 - DUF2069 domain-containing protein, at 1,673,459 to 1,673,848 _RS07840 RS_RS07845: RS_RS07845 - NAD(P)H:quinone oxidoreductase, at 1,673,845 to 1,674,438 _RS07845 RS_RS07850: RS_RS07850 - membrane protein, at 1,674,515 to 1,675,840 _RS07850 Position (kb) 1673 1674 1675Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1673.361 kb on + strandat 1673.362 kb on - strandat 1673.362 kb on - strandat 1673.655 kb on + strand, within RS_RS07840at 1674.173 kb on + strand, within RS_RS07845at 1674.417 kb on - strandat 1674.468 kb on + strandat 1674.469 kb on - strandat 1674.734 kb on + strand, within RS_RS07850at 1674.786 kb on - strand, within RS_RS07850at 1674.786 kb on - strand, within RS_RS07850at 1675.112 kb on + strand, within RS_RS07850at 1675.112 kb on + strand, within RS_RS07850at 1675.112 kb on + strand, within RS_RS07850at 1675.113 kb on - strand, within RS_RS07850at 1675.113 kb on - strand, within RS_RS07850at 1675.113 kb on - strand, within RS_RS07850at 1675.113 kb on - strand, within RS_RS07850at 1675.113 kb on - strand, within RS_RS07850at 1675.214 kb on + strand, within RS_RS07850at 1675.214 kb on + strand, within RS_RS07850at 1675.214 kb on + strand, within RS_RS07850at 1675.214 kb on + strand, within RS_RS07850at 1675.214 kb on + strand, within RS_RS07850at 1675.235 kb on + strand, within RS_RS07850at 1675.235 kb on + strandat 1675.235 kb on + strand, within RS_RS07850at 1675.236 kb on - strand, within RS_RS07850at 1675.289 kb on + strand, within RS_RS07850at 1675.338 kb on + strand, within RS_RS07850at 1675.339 kb on - strand, within RS_RS07850at 1675.359 kb on - strand, within RS_RS07850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
remove
1,673,361 + +1.9
1,673,362 - -0.2
1,673,362 - -0.8
1,673,655 + RS_RS07840 0.50 -0.8
1,674,173 + RS_RS07845 0.55 -2.2
1,674,417 - +1.2
1,674,468 + -2.0
1,674,469 - +2.9
1,674,734 + RS_RS07850 0.17 -2.2
1,674,786 - RS_RS07850 0.20 -0.7
1,674,786 - RS_RS07850 0.20 -0.8
1,675,112 + RS_RS07850 0.45 +0.2
1,675,112 + RS_RS07850 0.45 +0.2
1,675,112 + RS_RS07850 0.45 +0.5
1,675,113 - RS_RS07850 0.45 -0.1
1,675,113 - RS_RS07850 0.45 -0.9
1,675,113 - RS_RS07850 0.45 -1.8
1,675,113 - RS_RS07850 0.45 +0.8
1,675,113 - RS_RS07850 0.45 +0.2
1,675,214 + RS_RS07850 0.53 +0.8
1,675,214 + RS_RS07850 0.53 +1.4
1,675,214 + RS_RS07850 0.53 -0.1
1,675,214 + RS_RS07850 0.53 +1.8
1,675,214 + RS_RS07850 0.53 -1.2
1,675,235 + RS_RS07850 0.54 -0.4
1,675,235 + -0.2
1,675,235 + RS_RS07850 0.54 -0.9
1,675,236 - RS_RS07850 0.54 +2.1
1,675,289 + RS_RS07850 0.58 -1.7
1,675,338 + RS_RS07850 0.62 -2.5
1,675,339 - RS_RS07850 0.62 -1.0
1,675,359 - RS_RS07850 0.64 +1.8

Or see this region's nucleotide sequence