Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05965

Experiment: Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS05960 and RS_RS05965 overlap by 4 nucleotidesRS_RS05965 and RS_RS05970 are separated by 289 nucleotides RS_RS05960: RS_RS05960 - recombinase RecB, at 1,253,069 to 1,255,957 _RS05960 RS_RS05965: RS_RS05965 - ATP-dependent exonuclease, at 1,255,954 to 1,259,487 _RS05965 RS_RS05970: RS_RS05970 - DNA polymerase III subunit gamma/tau, at 1,259,777 to 1,261,963 _RS05970 Position (kb) 1255 1256 1257 1258 1259 1260Strain fitness (log2 ratio) -1 0 1at 1255.969 kb on + strandat 1255.969 kb on + strandat 1259.652 kb on + strandat 1259.679 kb on + strandat 1259.764 kb on + strandat 1259.764 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
remove
1,255,969 + -0.4
1,255,969 + -1.0
1,259,652 + -0.5
1,259,679 + -1.2
1,259,764 + +0.5
1,259,764 + -0.8

Or see this region's nucleotide sequence