Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS04870

Experiment: Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS04860 and RS_RS04865 are separated by 111 nucleotidesRS_RS04865 and RS_RS04870 are separated by 14 nucleotidesRS_RS04870 and RS_RS04875 are separated by 49 nucleotides RS_RS04860: RS_RS04860 - membrane protein, at 1,033,341 to 1,034,630 _RS04860 RS_RS04865: RS_RS04865 - phytanoyl-CoA dioxygenase family protein, at 1,034,742 to 1,035,404 _RS04865 RS_RS04870: RS_RS04870 - glutathione S-transferase, at 1,035,419 to 1,036,060 _RS04870 RS_RS04875: RS_RS04875 - PLP-dependent aminotransferase family protein, at 1,036,110 to 1,037,300 _RS04875 Position (kb) 1035 1036 1037Strain fitness (log2 ratio) -2 -1 0 1 2at 1034.461 kb on + strand, within RS_RS04860at 1034.743 kb on + strandat 1035.061 kb on - strand, within RS_RS04865at 1035.064 kb on + strand, within RS_RS04865at 1035.064 kb on + strand, within RS_RS04865at 1035.064 kb on + strand, within RS_RS04865at 1035.065 kb on - strand, within RS_RS04865at 1035.065 kb on - strand, within RS_RS04865at 1035.065 kb on - strand, within RS_RS04865at 1035.376 kb on + strandat 1035.377 kb on - strandat 1035.825 kb on + strand, within RS_RS04870at 1036.112 kb on - strandat 1036.486 kb on + strand, within RS_RS04875at 1036.627 kb on + strand, within RS_RS04875at 1036.682 kb on - strand, within RS_RS04875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
remove
1,034,461 + RS_RS04860 0.87 +0.9
1,034,743 + +1.9
1,035,061 - RS_RS04865 0.48 -1.0
1,035,064 + RS_RS04865 0.49 -0.7
1,035,064 + RS_RS04865 0.49 -0.7
1,035,064 + RS_RS04865 0.49 -0.3
1,035,065 - RS_RS04865 0.49 +0.1
1,035,065 - RS_RS04865 0.49 -0.4
1,035,065 - RS_RS04865 0.49 -0.8
1,035,376 + +0.8
1,035,377 - -2.2
1,035,825 + RS_RS04870 0.63 -0.0
1,036,112 - +0.3
1,036,486 + RS_RS04875 0.32 +0.9
1,036,627 + RS_RS04875 0.43 -1.1
1,036,682 - RS_RS04875 0.48 +0.3

Or see this region's nucleotide sequence