Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS04640

Experiment: Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS04635 and RS_RS04640 are separated by 145 nucleotidesRS_RS04640 and RS_RS04645 are separated by 68 nucleotidesRS_RS04645 and RS_RS04650 are separated by 23 nucleotides RS_RS04635: RS_RS04635 - sorbosone dehydrogenase, at 983,004 to 984,077 _RS04635 RS_RS04640: RS_RS04640 - 30S ribosomal protein S16, at 984,223 to 984,477 _RS04640 RS_RS04645: RS_RS04645 - ribosome maturation factor RimM, at 984,546 to 985,187 _RS04645 RS_RS04650: RS_RS04650 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 985,211 to 985,999 _RS04650 Position (kb) 984 985Strain fitness (log2 ratio) -2 -1 0 1 2at 983.281 kb on + strand, within RS_RS04635at 983.338 kb on + strand, within RS_RS04635at 983.338 kb on + strand, within RS_RS04635at 983.341 kb on - strand, within RS_RS04635at 983.602 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.804 kb on - strand, within RS_RS04635at 983.899 kb on + strand, within RS_RS04635at 983.900 kb on - strand, within RS_RS04635at 983.927 kb on - strand, within RS_RS04635

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
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983,281 + RS_RS04635 0.26 -0.3
983,338 + RS_RS04635 0.31 -0.2
983,338 + RS_RS04635 0.31 -0.5
983,341 - RS_RS04635 0.31 +0.4
983,602 + RS_RS04635 0.56 +0.2
983,653 + RS_RS04635 0.60 -1.1
983,653 + RS_RS04635 0.60 -0.5
983,653 + RS_RS04635 0.60 -0.1
983,653 + RS_RS04635 0.60 -0.1
983,653 + RS_RS04635 0.60 +0.3
983,653 + RS_RS04635 0.60 -2.2
983,654 - RS_RS04635 0.61 +1.9
983,654 - RS_RS04635 0.61 -0.5
983,654 - RS_RS04635 0.61 +0.8
983,654 - RS_RS04635 0.61 +0.5
983,654 - RS_RS04635 0.61 +0.4
983,654 - RS_RS04635 0.61 -0.1
983,654 - RS_RS04635 0.61 +0.7
983,654 - RS_RS04635 0.61 -0.8
983,803 + RS_RS04635 0.74 -1.0
983,803 + RS_RS04635 0.74 -1.2
983,803 + RS_RS04635 0.74 +0.4
983,803 + RS_RS04635 0.74 +0.9
983,803 + RS_RS04635 0.74 +0.1
983,803 + RS_RS04635 0.74 +0.7
983,804 - RS_RS04635 0.74 -0.3
983,899 + RS_RS04635 0.83 -1.8
983,900 - RS_RS04635 0.83 +1.9
983,927 - RS_RS04635 0.86 -0.2

Or see this region's nucleotide sequence