Experiment: Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04605 and RS_RS04610 are separated by 112 nucleotides RS_RS04610 and RS_RS04615 are separated by 247 nucleotides RS_RS04615 and RS_RS04620 are separated by 1 nucleotides RS_RS04620 and RS_RS04625 are separated by 204 nucleotides RS_RS04625 and RS_RS04630 are separated by 119 nucleotides
RS_RS04605: RS_RS04605 - D-amino acid dehydrogenase small subunit, at 978,179 to 979,468
_RS04605
RS_RS04610: RS_RS04610 - AsnC family transcriptional regulator, at 979,581 to 980,078
_RS04610
RS_RS04615: RS_RS04615 - radical SAM protein, at 980,326 to 981,453
_RS04615
RS_RS04620: RS_RS04620 - NINE protein, at 981,455 to 981,910
_RS04620
RS_RS04625: RS_RS04625 - hypothetical protein, at 982,115 to 982,297
_RS04625
RS_RS04630: RS_RS04630 - hypothetical protein, at 982,417 to 982,821
_RS04630
Position (kb) 980
981
982 Strain fitness (log2 ratio) -2
-1
0
1
2 at 979.417 kb on - strand at 979.419 kb on + strand at 979.420 kb on - strand at 979.513 kb on + strand at 979.513 kb on + strand at 979.514 kb on - strand at 979.542 kb on + strand at 979.543 kb on - strand at 979.761 kb on + strand, within RS_RS04610 at 979.921 kb on - strand, within RS_RS04610 at 980.016 kb on + strand, within RS_RS04610 at 980.016 kb on + strand, within RS_RS04610 at 980.016 kb on + strand, within RS_RS04610 at 980.017 kb on - strand, within RS_RS04610 at 980.017 kb on - strand, within RS_RS04610 at 980.017 kb on - strand, within RS_RS04610 at 980.593 kb on + strand, within RS_RS04615 at 980.593 kb on + strand, within RS_RS04615 at 980.593 kb on + strand, within RS_RS04615 at 980.758 kb on + strand, within RS_RS04615 at 980.758 kb on + strand, within RS_RS04615 at 980.759 kb on - strand, within RS_RS04615 at 981.128 kb on - strand, within RS_RS04615 at 981.129 kb on + strand, within RS_RS04615 at 981.129 kb on + strand, within RS_RS04615 at 981.130 kb on - strand, within RS_RS04615 at 981.251 kb on - strand, within RS_RS04615 at 981.320 kb on - strand, within RS_RS04615 at 981.349 kb on + strand at 981.350 kb on - strand at 981.350 kb on - strand at 981.573 kb on - strand, within RS_RS04620 at 981.651 kb on + strand, within RS_RS04620 at 981.652 kb on - strand, within RS_RS04620 at 981.822 kb on + strand, within RS_RS04620 at 981.904 kb on + strand at 981.904 kb on + strand at 981.904 kb on + strand at 981.904 kb on + strand at 981.904 kb on + strand at 981.904 kb on + strand at 981.905 kb on - strand at 981.957 kb on + strand at 982.051 kb on - strand at 982.117 kb on - strand at 982.348 kb on + strand at 982.349 kb on - strand at 982.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 979,417 - +0.2 979,419 + -0.1 979,420 - +0.1 979,513 + +0.6 979,513 + +1.2 979,514 - -1.0 979,542 + +1.9 979,543 - -1.1 979,761 + RS_RS04610 0.36 +0.2 979,921 - RS_RS04610 0.68 +0.0 980,016 + RS_RS04610 0.87 +0.2 980,016 + RS_RS04610 0.87 -0.1 980,016 + RS_RS04610 0.87 +1.3 980,017 - RS_RS04610 0.88 -0.6 980,017 - RS_RS04610 0.88 -0.5 980,017 - RS_RS04610 0.88 +0.4 980,593 + RS_RS04615 0.24 +0.7 980,593 + RS_RS04615 0.24 -0.1 980,593 + RS_RS04615 0.24 +0.4 980,758 + RS_RS04615 0.38 -0.5 980,758 + RS_RS04615 0.38 -0.6 980,759 - RS_RS04615 0.38 +1.0 981,128 - RS_RS04615 0.71 -1.2 981,129 + RS_RS04615 0.71 +1.0 981,129 + RS_RS04615 0.71 +0.2 981,130 - RS_RS04615 0.71 -0.1 981,251 - RS_RS04615 0.82 +0.2 981,320 - RS_RS04615 0.88 +0.9 981,349 + -0.8 981,350 - +0.1 981,350 - +0.1 981,573 - RS_RS04620 0.26 -0.5 981,651 + RS_RS04620 0.43 -0.7 981,652 - RS_RS04620 0.43 +0.9 981,822 + RS_RS04620 0.80 -0.8 981,904 + -2.1 981,904 + -0.6 981,904 + +0.3 981,904 + -0.6 981,904 + -1.6 981,904 + -1.1 981,905 - -1.9 981,957 + -0.5 982,051 - +1.9 982,117 - +1.0 982,348 + -0.3 982,349 - +0.8 982,349 - -0.1
Or see this region's nucleotide sequence