Experiment: Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03165 and RS_RS03170 are separated by 80 nucleotides RS_RS03170 and RS_RS03175 are separated by 56 nucleotides RS_RS03175 and RS_RS03180 are separated by 2 nucleotides RS_RS03180 and RS_RS03185 are separated by 408 nucleotides
RS_RS03165: RS_RS03165 - hypothetical protein, at 677,809 to 678,165
_RS03165
RS_RS03170: RS_RS03170 - hypothetical protein, at 678,246 to 678,974
_RS03170
RS_RS03175: RS_RS03175 - NAD(P)-dependent alcohol dehydrogenase, at 679,031 to 680,089
_RS03175
RS_RS03180: RS_RS03180 - flavodoxin family protein, at 680,092 to 680,664
_RS03180
RS_RS03185: RS_RS03185 - LysR family transcriptional regulator, at 681,073 to 682,029
_RS03185
Position (kb) 679
680
681 Strain fitness (log2 ratio) -2
-1
0
1
2 at 678.039 kb on - strand, within RS_RS03165 at 678.136 kb on - strand at 678.146 kb on + strand at 678.147 kb on - strand at 678.147 kb on - strand at 678.163 kb on + strand at 678.163 kb on + strand at 678.228 kb on + strand at 678.228 kb on + strand at 678.319 kb on + strand, within RS_RS03170 at 678.320 kb on - strand, within RS_RS03170 at 678.320 kb on - strand, within RS_RS03170 at 678.706 kb on + strand, within RS_RS03170 at 678.707 kb on - strand, within RS_RS03170 at 678.707 kb on - strand, within RS_RS03170 at 678.707 kb on - strand, within RS_RS03170 at 678.751 kb on - strand, within RS_RS03170 at 678.779 kb on - strand, within RS_RS03170 at 678.779 kb on - strand, within RS_RS03170 at 678.779 kb on - strand, within RS_RS03170 at 678.787 kb on + strand, within RS_RS03170 at 678.787 kb on + strand, within RS_RS03170 at 678.898 kb on + strand, within RS_RS03170 at 678.899 kb on - strand, within RS_RS03170 at 679.060 kb on + strand at 679.060 kb on + strand at 679.060 kb on + strand at 679.061 kb on - strand at 679.061 kb on - strand at 679.061 kb on - strand at 679.322 kb on - strand, within RS_RS03175 at 679.463 kb on - strand, within RS_RS03175 at 679.782 kb on + strand, within RS_RS03175 at 679.856 kb on - strand, within RS_RS03175 at 679.923 kb on + strand, within RS_RS03175 at 679.924 kb on - strand, within RS_RS03175 at 679.924 kb on - strand, within RS_RS03175 at 679.930 kb on + strand, within RS_RS03175 at 679.983 kb on + strand, within RS_RS03175 at 680.042 kb on + strand at 680.043 kb on - strand at 680.043 kb on - strand at 680.093 kb on + strand at 680.094 kb on - strand at 680.483 kb on + strand, within RS_RS03180 at 680.484 kb on - strand, within RS_RS03180 at 680.645 kb on + strand at 680.645 kb on + strand at 680.645 kb on + strand at 680.645 kb on + strand at 681.023 kb on + strand at 681.047 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 678,039 - RS_RS03165 0.64 +0.5 678,136 - -0.5 678,146 + -0.5 678,147 - -0.3 678,147 - -0.8 678,163 + +0.1 678,163 + +0.9 678,228 + -0.6 678,228 + +1.0 678,319 + RS_RS03170 0.10 -0.3 678,320 - RS_RS03170 0.10 +0.3 678,320 - RS_RS03170 0.10 -0.3 678,706 + RS_RS03170 0.63 -0.2 678,707 - RS_RS03170 0.63 -0.5 678,707 - RS_RS03170 0.63 +0.5 678,707 - RS_RS03170 0.63 +0.2 678,751 - RS_RS03170 0.69 +0.5 678,779 - RS_RS03170 0.73 +0.1 678,779 - RS_RS03170 0.73 -0.2 678,779 - RS_RS03170 0.73 +0.1 678,787 + RS_RS03170 0.74 -0.7 678,787 + RS_RS03170 0.74 +1.2 678,898 + RS_RS03170 0.89 -0.5 678,899 - RS_RS03170 0.90 +2.5 679,060 + -0.8 679,060 + -1.3 679,060 + -0.6 679,061 - -0.3 679,061 - -0.2 679,061 - +1.2 679,322 - RS_RS03175 0.27 -1.6 679,463 - RS_RS03175 0.41 -1.8 679,782 + RS_RS03175 0.71 -0.6 679,856 - RS_RS03175 0.78 +1.2 679,923 + RS_RS03175 0.84 -1.0 679,924 - RS_RS03175 0.84 +0.7 679,924 - RS_RS03175 0.84 -0.5 679,930 + RS_RS03175 0.85 +0.2 679,983 + RS_RS03175 0.90 -0.4 680,042 + -0.1 680,043 - +1.3 680,043 - +0.1 680,093 + +0.9 680,094 - -0.5 680,483 + RS_RS03180 0.68 -0.8 680,484 - RS_RS03180 0.68 +0.8 680,645 + -1.2 680,645 + -0.2 680,645 + +0.2 680,645 + -0.3 681,023 + -0.4 681,047 - +0.6
Or see this region's nucleotide sequence