Experiment: Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01680 and RS_RS01685 are separated by 47 nucleotides RS_RS01685 and RS_RS01690 are separated by 32 nucleotides
RS_RS01680: RS_RS01680 - hypothetical protein, at 373,434 to 374,240
_RS01680
RS_RS01685: RS_RS01685 - nitrogen regulatory protein P-II 1, at 374,288 to 374,626
_RS01685
RS_RS01690: RS_RS01690 - ammonium transporter, at 374,659 to 376,209
_RS01690
Position (kb) 374
375 Strain fitness (log2 ratio) -2
-1
0
1
2 at 373.333 kb on - strand at 373.341 kb on + strand at 373.341 kb on + strand at 373.341 kb on + strand at 373.342 kb on - strand at 373.342 kb on - strand at 373.342 kb on - strand at 373.342 kb on - strand at 373.342 kb on - strand at 373.343 kb on + strand at 373.343 kb on + strand at 373.343 kb on + strand at 373.343 kb on + strand at 373.344 kb on - strand at 373.344 kb on - strand at 373.344 kb on - strand at 373.417 kb on - strand at 374.077 kb on - strand at 374.139 kb on + strand, within RS_RS01680 at 374.169 kb on + strand at 374.190 kb on + strand at 374.190 kb on + strand at 374.190 kb on + strand at 374.191 kb on - strand at 374.216 kb on - strand at 374.216 kb on - strand at 374.424 kb on - strand, within RS_RS01685 at 374.439 kb on - strand, within RS_RS01685 at 374.625 kb on - strand at 374.625 kb on - strand at 374.625 kb on - strand at 374.983 kb on + strand, within RS_RS01690 at 374.984 kb on - strand, within RS_RS01690 at 375.033 kb on + strand, within RS_RS01690 at 375.034 kb on - strand, within RS_RS01690 at 375.074 kb on - strand, within RS_RS01690 at 375.074 kb on - strand, within RS_RS01690 at 375.074 kb on - strand, within RS_RS01690 at 375.079 kb on + strand, within RS_RS01690 at 375.188 kb on + strand, within RS_RS01690 at 375.199 kb on + strand, within RS_RS01690 at 375.205 kb on + strand, within RS_RS01690 at 375.205 kb on + strand, within RS_RS01690 at 375.325 kb on + strand, within RS_RS01690 at 375.552 kb on + strand, within RS_RS01690
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 373,333 - +0.7 373,341 + +1.4 373,341 + -1.0 373,341 + -2.4 373,342 - -0.3 373,342 - +1.2 373,342 - -0.8 373,342 - -1.7 373,342 - -1.6 373,343 + -1.8 373,343 + -1.7 373,343 + +0.9 373,343 + +0.5 373,344 - -0.2 373,344 - -1.0 373,344 - -0.8 373,417 - +0.3 374,077 - +1.5 374,139 + RS_RS01680 0.87 -1.5 374,169 + +1.0 374,190 + -0.8 374,190 + +0.0 374,190 + -0.6 374,191 - +0.2 374,216 - +0.1 374,216 - +0.2 374,424 - RS_RS01685 0.40 -0.9 374,439 - RS_RS01685 0.45 -0.1 374,625 - -0.5 374,625 - +1.2 374,625 - +0.2 374,983 + RS_RS01690 0.21 -0.1 374,984 - RS_RS01690 0.21 +0.2 375,033 + RS_RS01690 0.24 +0.9 375,034 - RS_RS01690 0.24 +0.4 375,074 - RS_RS01690 0.27 +0.6 375,074 - RS_RS01690 0.27 +0.4 375,074 - RS_RS01690 0.27 +1.2 375,079 + RS_RS01690 0.27 -1.0 375,188 + RS_RS01690 0.34 +1.4 375,199 + RS_RS01690 0.35 -0.2 375,205 + RS_RS01690 0.35 -0.2 375,205 + RS_RS01690 0.35 -2.6 375,325 + RS_RS01690 0.43 -1.7 375,552 + RS_RS01690 0.58 +2.2
Or see this region's nucleotide sequence