Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06190

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
1,384,228	+		PFLU_RS06185	0.82	+0.1
1,384,251	+		PFLU_RS06185	0.83	-1.2
1,384,251	+		PFLU_RS06185	0.83	-3.7
1,384,251	+		PFLU_RS06185	0.83	+0.7
1,384,251	+		PFLU_RS06185	0.83	+0.3
1,384,251	+		PFLU_RS06185	0.83	+0.4
1,384,251	+		PFLU_RS06185	0.83	-0.7
1,384,252	-		PFLU_RS06185	0.83	+0.4
1,384,252	-		PFLU_RS06185	0.83	-2.9
1,384,441	+		PFLU_RS06185	0.89	-2.0
1,384,442	-		PFLU_RS06185	0.89	-0.6
1,384,442	-		PFLU_RS06185	0.89	-2.1
1,384,442	-		PFLU_RS06185	0.89	+1.6
1,384,508	+				+0.6
1,384,509	-				-2.2
1,384,509	-				+0.7
1,384,509	-				+0.3
1,384,509	-				+0.3
1,384,509	-				+1.1
1,384,509	-				-1.8
1,384,509	-				-0.7
1,384,577	-				-0.7
1,384,577	-				-0.7
1,384,633	+				-1.0
1,384,633	+				+0.4
1,384,634	-				-0.2
1,384,746	+				+0.7
1,384,747	-				+0.3
1,384,747	-				+0.4
1,384,782	+				+0.1
1,384,783	-				-3.0
1,384,783	-				-1.6
1,384,783	-				+0.8
1,384,796	-				+0.6
1,384,802	-				-0.9
1,384,813	+				+0.6
1,384,813	+				-0.4
1,384,813	+				-0.6
1,384,813	+				-2.4
1,384,813	+				+0.0
1,384,813	+				+0.8
1,384,813	+				-0.1
1,384,813	+				+1.1
1,384,814	-				+0.4
1,384,814	-				+0.4
1,384,814	-				-0.1
1,384,814	-				+1.3
1,384,814	-				-0.4
1,384,814	-				+0.9
1,384,814	-				+1.7
1,384,814	-				-2.0
1,384,816	+				-1.1
1,384,816	+				-0.1
1,384,817	-				+1.1
1,384,817	-				-1.8
1,384,834	+				-2.2
1,384,860	+				-1.0
1,384,860	+				+0.5
1,384,860	+				+0.3
1,384,861	-				+1.0
1,384,894	+				-0.8
1,384,894	+				+1.0
1,384,894	+				+0.9
1,384,894	+				-0.9
1,384,894	+				-1.2
1,384,894	+				-2.5
1,384,894	+				+1.5
1,384,895	-				-1.0
1,384,895	-				+0.5
1,384,895	-				-1.2
1,384,895	-				-2.1
1,384,914	+				+0.6
1,384,914	+				+1.3
1,384,914	+				-3.1
1,384,914	+				-0.7
1,384,914	+				-0.3
1,384,914	+				+0.5
1,384,914	+				-1.5
1,384,914	+				-2.0
1,384,914	+				-0.9
1,384,914	+				-0.1
1,384,915	-				-0.0
1,384,915	-				+1.2
1,384,935	+				+0.6
1,384,935	+				-1.4
1,384,935	+				-1.0
1,384,935	+				-1.4
1,384,935	+				+1.6
1,384,936	-				-1.3
1,384,936	-				+0.5
1,384,936	-				+2.3
1,384,936	-				-3.0
1,384,936	-				+0.7
1,384,940	-				-2.0
1,384,947	+				-2.1
1,384,947	+				-0.3
1,384,947	+				-0.0
1,384,947	+				+0.2
1,384,947	+				-0.3
1,384,947	+				-0.1
1,384,947	+				+0.0
1,384,947	+				+1.1
1,384,947	+				+1.7
1,384,947	+				-1.5
1,384,948	-				+1.5
1,384,948	-				+0.4
1,384,948	-				+1.2
1,384,948	-				+1.2
1,384,951	+				-0.4
1,384,951	+				-1.4
1,384,954	+				+0.1
1,384,955	-				+0.8
1,384,960	+				-3.5
1,385,011	+				+0.5
1,385,012	-				-2.3
1,385,012	-				+0.5
1,385,044	+				+0.6
1,385,045	-				+0.9
1,385,045	-				-2.1
1,385,134	+				+0.7
1,385,135	-				-2.7
1,385,136	+				+1.8
1,385,136	+				-0.0
1,385,136	+				+0.0
1,385,136	+				+0.4
1,385,137	-				-0.1
1,385,137	-				-1.5
1,385,150	+				-3.2
1,385,150	+				-0.9
1,385,151	-				+0.0
1,385,151	-				+0.1
1,385,151	-				-1.4
1,385,151	-				-0.6
1,385,151	-				-1.3
1,385,151	-				+0.6
1,385,151	-				-0.0
1,385,151	-				-2.6
1,385,154	+				+0.3
1,385,155	-				+0.2
1,385,221	+				-1.2
1,385,221	+				+2.8
1,385,222	-				-0.9
1,385,222	-				+0.5
1,385,341	+		PFLU_RS06190	0.18	-1.7
1,385,341	+		PFLU_RS06190	0.18	+0.3
1,385,341	+		PFLU_RS06190	0.18	-0.2
1,385,341	+		PFLU_RS06190	0.18	+0.4
1,385,341	+		PFLU_RS06190	0.18	-0.9
1,385,410	+		PFLU_RS06190	0.28	-2.3
1,385,410	+		PFLU_RS06190	0.28	+1.7
1,385,410	+		PFLU_RS06190	0.28	-1.3
1,385,410	+		PFLU_RS06190	0.28	+0.3
1,385,410	+		PFLU_RS06190	0.28	+0.1
1,385,410	+		PFLU_RS06190	0.28	-0.3
1,385,410	+		PFLU_RS06190	0.28	+2.7
1,385,410	+		PFLU_RS06190	0.28	+0.3
1,385,410	+		PFLU_RS06190	0.28	+0.3
1,385,410	+		PFLU_RS06190	0.28	-0.1
1,385,411	-		PFLU_RS06190	0.28	+0.0
1,385,411	-		PFLU_RS06190	0.28	-1.0
1,385,411	-		PFLU_RS06190	0.28	+1.8
1,385,411	-		PFLU_RS06190	0.28	-0.4
1,385,411	-		PFLU_RS06190	0.28	+0.4
1,385,411	-		PFLU_RS06190	0.28	-0.5
1,385,411	-		PFLU_RS06190	0.28	-2.8
1,385,411	-		PFLU_RS06190	0.28	-0.6
1,385,411	-		PFLU_RS06190	0.28	+1.1
1,385,411	-		PFLU_RS06190	0.28	-1.1
1,385,411	-		PFLU_RS06190	0.28	+0.7
1,385,411	-		PFLU_RS06190	0.28	+0.1
1,385,411	-		PFLU_RS06190	0.28	-0.1
1,385,411	-		PFLU_RS06190	0.28	+0.2
1,385,500	+		PFLU_RS06190	0.41	-1.3
1,385,501	-		PFLU_RS06190	0.41	-0.1
1,385,501	-		PFLU_RS06190	0.41	+1.8
1,385,501	-		PFLU_RS06190	0.41	-2.6
1,385,885	+				+1.3
1,385,900	+				+0.2
1,385,900	+				-1.3
1,385,901	-				-3.2
1,385,927	-				-0.8
1,385,933	+				-0.4
1,385,933	+				+0.0
1,385,933	+				+1.0
1,385,933	+				+0.8
1,385,933	+				+1.5
1,385,933	+				+0.8
1,385,933	+				-0.8
1,385,933	+				-2.3
1,385,933	+				-0.3
1,385,933	+				-3.8
1,385,933	+				+0.1
1,385,933	+				+0.2
1,385,933	+				+0.1
1,385,933	+				+0.4
1,385,933	+				-0.3
1,385,933	+				+1.4
1,385,933	+				+0.7
1,385,933	+				+0.1
1,385,933	+				-0.0
1,385,933	+				+0.8
1,385,933	+				-1.0
1,385,933	+				-1.0
1,385,933	+				+1.1
1,385,933	+				+2.5
1,385,933	+				-1.7
1,385,934	-				+0.4
1,385,934	-				-0.6
1,385,934	-				-0.4
1,385,934	-				-0.7
1,385,934	-				-0.1
1,385,934	-				+0.6
1,385,934	-				+0.8
1,385,934	-				+1.9
1,385,934	-				+1.1
1,385,934	-				+0.5
1,385,934	-				-2.8
1,385,934	-				+0.5
1,385,934	-				+0.2
1,385,934	-				+0.2
1,385,934	-				-1.1
1,385,934	-				+0.5
1,385,940	+				+1.5
1,385,940	+				+2.7
1,385,940	+				-0.6
1,385,940	+				+0.4
1,385,941	-				-2.0
1,385,959	+				+0.5
1,385,959	+				+0.5
1,385,960	-				+0.7
1,385,960	-				+1.1
1,386,033	+		PFLU_RS06195	0.21	+0.2
1,386,033	+		PFLU_RS06195	0.21	+0.8
1,386,033	+		PFLU_RS06195	0.21	-0.3
1,386,033	+		PFLU_RS06195	0.21	+1.5
1,386,034	-		PFLU_RS06195	0.21	-2.4
1,386,040	+		PFLU_RS06195	0.22	+0.1
1,386,040	+		PFLU_RS06195	0.22	-1.3
1,386,040	+		PFLU_RS06195	0.22	+1.6
1,386,040	+		PFLU_RS06195	0.22	+1.6
1,386,040	+		PFLU_RS06195	0.22	+0.0
1,386,040	+		PFLU_RS06195	0.22	+0.5
1,386,040	+		PFLU_RS06195	0.22	+1.0
1,386,040	+		PFLU_RS06195	0.22	+1.2
1,386,041	-		PFLU_RS06195	0.23	-0.2
1,386,041	-		PFLU_RS06195	0.23	-1.8
1,386,041	-		PFLU_RS06195	0.23	-0.1
1,386,041	-		PFLU_RS06195	0.23	-1.2
1,386,077	+		PFLU_RS06195	0.32	-2.7
1,386,077	+		PFLU_RS06195	0.32	-0.5
1,386,077	+		PFLU_RS06195	0.32	-0.1
1,386,077	+		PFLU_RS06195	0.32	-1.7
1,386,078	-		PFLU_RS06195	0.32	+0.4
1,386,078	-		PFLU_RS06195	0.32	-0.1
1,386,078	-		PFLU_RS06195	0.32	-2.6
1,386,078	-		PFLU_RS06195	0.32	-1.1
1,386,078	-		PFLU_RS06195	0.32	+2.9
1,386,110	+		PFLU_RS06195	0.40	-0.5
1,386,110	+		PFLU_RS06195	0.40	-1.1
1,386,110	+		PFLU_RS06195	0.40	+0.7
1,386,110	+		PFLU_RS06195	0.40	-1.1
1,386,110	+		PFLU_RS06195	0.40	+0.7
1,386,110	+		PFLU_RS06195	0.40	+0.2
1,386,110	+		PFLU_RS06195	0.40	-0.4
1,386,111	-		PFLU_RS06195	0.40	-1.0
1,386,111	-		PFLU_RS06195	0.40	-1.2
1,386,111	-		PFLU_RS06195	0.40	+0.6
1,386,111	-		PFLU_RS06195	0.40	-0.6
1,386,243	+		PFLU_RS06195	0.73	+1.7
1,386,243	+		PFLU_RS06195	0.73	-0.6
1,386,243	+		PFLU_RS06195	0.73	+0.1
1,386,243	+		PFLU_RS06195	0.73	-1.9
1,386,244	-		PFLU_RS06195	0.73	-1.2
1,386,254	+		PFLU_RS06195	0.76	-0.2
1,386,254	+		PFLU_RS06195	0.76	-1.5
1,386,254	+		PFLU_RS06195	0.76	-1.3
1,386,255	-		PFLU_RS06195	0.76	-1.0
1,386,255	-		PFLU_RS06195	0.76	+0.2
1,386,255	-		PFLU_RS06195	0.76	-0.5
1,386,255	-		PFLU_RS06195	0.76	-1.3
1,386,255	-		PFLU_RS06195	0.76	-0.4
1,386,255	-		PFLU_RS06195	0.76	-0.1
1,386,255	-		PFLU_RS06195	0.76	-0.8
1,386,255	-		PFLU_RS06195	0.76	+1.1
1,386,255	-		PFLU_RS06195	0.76	-0.6
1,386,398	+				-2.5
1,386,398	+				+0.1
1,386,398	+				+1.1
1,386,399	-				+0.7
1,386,399	-				-1.8
1,386,405	-				-0.2
1,386,560	+				+0.5
1,386,561	-				+1.1
1,386,561	-				-0.6
1,386,561	-				-0.4
1,386,571	-				+0.3
1,386,607	+				+1.9
1,386,607	+				+0.4
1,386,608	-				-2.1
1,386,770	+		PFLU_RS06200	0.15	-2.1
1,386,770	+		PFLU_RS06200	0.15	-0.2
1,386,770	+		PFLU_RS06200	0.15	-0.3
1,386,770	+		PFLU_RS06200	0.15	+0.3
1,386,770	+		PFLU_RS06200	0.15	-2.5
1,386,770	+		PFLU_RS06200	0.15	-2.3
1,386,770	+		PFLU_RS06200	0.15	-1.0
1,386,770	+		PFLU_RS06200	0.15	-0.6
1,386,770	+		PFLU_RS06200	0.15	-1.4
1,386,770	+		PFLU_RS06200	0.15	+1.6
1,386,770	+		PFLU_RS06200	0.15	+0.3
1,386,770	+		PFLU_RS06200	0.15	+0.8
1,386,770	+		PFLU_RS06200	0.15	-2.1
1,386,770	+		PFLU_RS06200	0.15	+1.7
1,386,770	+		PFLU_RS06200	0.15	+0.9
1,386,770	+		PFLU_RS06200	0.15	+0.2
1,386,771	-		PFLU_RS06200	0.15	-0.1
1,386,771	-		PFLU_RS06200	0.15	-0.3
1,386,771	-		PFLU_RS06200	0.15	+0.4
1,386,771	-		PFLU_RS06200	0.15	-1.0
1,386,771	-		PFLU_RS06200	0.15	+0.1
1,386,771	-		PFLU_RS06200	0.15	+1.2
1,386,771	-		PFLU_RS06200	0.15	-1.1
1,386,771	-		PFLU_RS06200	0.15	-0.2
1,386,771	-		PFLU_RS06200	0.15	-0.7
1,386,771	-		PFLU_RS06200	0.15	+0.2
1,386,771	-		PFLU_RS06200	0.15	+0.0
1,386,771	-		PFLU_RS06200	0.15	+0.5
1,386,771	-		PFLU_RS06200	0.15	+0.7
1,386,854	+		PFLU_RS06200	0.18	-1.8
1,386,854	+		PFLU_RS06200	0.18	+0.1
1,386,854	+		PFLU_RS06200	0.18	-0.8
1,386,854	+		PFLU_RS06200	0.18	+0.6
1,386,855	-		PFLU_RS06200	0.18	+1.0
1,386,855	-		PFLU_RS06200	0.18	+0.5
1,386,855	-		PFLU_RS06200	0.18	-0.8