Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00680

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00660 and PGA1_c00670 overlap by 4 nucleotidesPGA1_c00670 and PGA1_c00680 are separated by 6 nucleotidesPGA1_c00680 and PGA1_c00690 are separated by 96 nucleotides PGA1_c00660: PGA1_c00660 - transcriptional regulator, lysR family, at 66,746 to 67,624 _c00660 PGA1_c00670: PGA1_c00670 - putative integral membrane protein, at 67,621 to 68,529 _c00670 PGA1_c00680: PGA1_c00680 - transcriptional regulator, arsR family, at 68,536 to 68,883 _c00680 PGA1_c00690: PGA1_c00690 - putative integral membrane protein, at 68,980 to 69,873 _c00690 Position (kb) 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 67.550 kb on + strandat 67.550 kb on + strandat 67.558 kb on - strandat 67.571 kb on - strandat 67.595 kb on - strandat 67.609 kb on + strandat 67.609 kb on + strandat 67.617 kb on - strandat 67.617 kb on - strandat 67.642 kb on - strandat 67.659 kb on - strandat 67.694 kb on + strandat 67.717 kb on + strand, within PGA1_c00670at 67.718 kb on + strand, within PGA1_c00670at 67.721 kb on - strand, within PGA1_c00670at 67.728 kb on + strand, within PGA1_c00670at 67.728 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.787 kb on + strand, within PGA1_c00670at 67.788 kb on - strand, within PGA1_c00670at 67.792 kb on + strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.795 kb on - strand, within PGA1_c00670at 67.864 kb on + strand, within PGA1_c00670at 67.902 kb on - strand, within PGA1_c00670at 67.907 kb on + strand, within PGA1_c00670at 67.912 kb on + strand, within PGA1_c00670at 67.940 kb on - strand, within PGA1_c00670at 67.971 kb on + strand, within PGA1_c00670at 67.990 kb on + strand, within PGA1_c00670at 67.990 kb on + strand, within PGA1_c00670at 67.990 kb on + strand, within PGA1_c00670at 67.990 kb on + strand, within PGA1_c00670at 67.990 kb on + strand, within PGA1_c00670at 67.998 kb on - strand, within PGA1_c00670at 67.998 kb on - strand, within PGA1_c00670at 68.046 kb on + strand, within PGA1_c00670at 68.109 kb on + strand, within PGA1_c00670at 68.120 kb on + strand, within PGA1_c00670at 68.147 kb on + strand, within PGA1_c00670at 68.167 kb on + strand, within PGA1_c00670at 68.255 kb on + strand, within PGA1_c00670at 68.288 kb on - strand, within PGA1_c00670at 68.288 kb on - strand, within PGA1_c00670at 68.288 kb on - strand, within PGA1_c00670at 68.288 kb on - strand, within PGA1_c00670at 68.303 kb on - strand, within PGA1_c00670at 68.312 kb on + strand, within PGA1_c00670at 68.312 kb on + strand, within PGA1_c00670at 68.312 kb on + strand, within PGA1_c00670at 68.330 kb on + strand, within PGA1_c00670at 68.344 kb on - strand, within PGA1_c00670at 68.354 kb on - strand, within PGA1_c00670at 68.358 kb on + strand, within PGA1_c00670at 68.366 kb on - strand, within PGA1_c00670at 68.366 kb on - strand, within PGA1_c00670at 68.366 kb on - strand, within PGA1_c00670at 68.366 kb on - strand, within PGA1_c00670at 68.367 kb on - strand, within PGA1_c00670at 68.373 kb on - strand, within PGA1_c00670at 68.375 kb on + strand, within PGA1_c00670at 68.375 kb on + strand, within PGA1_c00670at 68.377 kb on - strand, within PGA1_c00670at 68.377 kb on - strand, within PGA1_c00670at 68.384 kb on - strand, within PGA1_c00670at 68.418 kb on - strand, within PGA1_c00670at 68.423 kb on - strand, within PGA1_c00670at 68.514 kb on + strandat 68.532 kb on - strandat 68.548 kb on + strandat 68.553 kb on - strandat 68.578 kb on - strand, within PGA1_c00680at 68.584 kb on - strand, within PGA1_c00680at 68.612 kb on + strand, within PGA1_c00680at 68.835 kb on + strand, within PGA1_c00680at 68.891 kb on + strandat 68.899 kb on - strandat 68.899 kb on - strandat 68.984 kb on - strandat 68.991 kb on + strandat 69.006 kb on - strandat 69.028 kb on + strandat 69.073 kb on - strand, within PGA1_c00690at 69.076 kb on + strand, within PGA1_c00690at 69.078 kb on + strand, within PGA1_c00690at 69.109 kb on + strand, within PGA1_c00690at 69.131 kb on - strand, within PGA1_c00690at 69.201 kb on + strand, within PGA1_c00690at 69.201 kb on - strand, within PGA1_c00690at 69.238 kb on - strand, within PGA1_c00690at 69.246 kb on - strand, within PGA1_c00690at 69.292 kb on - strand, within PGA1_c00690at 69.320 kb on - strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.322 kb on + strand, within PGA1_c00690at 69.323 kb on + strand, within PGA1_c00690at 69.330 kb on - strand, within PGA1_c00690at 69.330 kb on - strand, within PGA1_c00690at 69.330 kb on - strand, within PGA1_c00690at 69.330 kb on - strand, within PGA1_c00690at 69.378 kb on + strand, within PGA1_c00690at 69.419 kb on + strand, within PGA1_c00690at 69.419 kb on + strand, within PGA1_c00690at 69.426 kb on + strand, within PGA1_c00690at 69.426 kb on + strand, within PGA1_c00690at 69.426 kb on + strand, within PGA1_c00690at 69.426 kb on + strand, within PGA1_c00690at 69.427 kb on - strand, within PGA1_c00690at 69.434 kb on - strand, within PGA1_c00690at 69.434 kb on - strand, within PGA1_c00690at 69.434 kb on - strand, within PGA1_c00690at 69.434 kb on - strand, within PGA1_c00690at 69.457 kb on + strand, within PGA1_c00690at 69.457 kb on + strand, within PGA1_c00690at 69.457 kb on + strand, within PGA1_c00690at 69.457 kb on + strand, within PGA1_c00690at 69.462 kb on + strand, within PGA1_c00690at 69.465 kb on - strand, within PGA1_c00690at 69.465 kb on - strand, within PGA1_c00690at 69.545 kb on - strand, within PGA1_c00690at 69.592 kb on + strand, within PGA1_c00690at 69.609 kb on + strand, within PGA1_c00690at 69.609 kb on + strand, within PGA1_c00690at 69.617 kb on - strand, within PGA1_c00690at 69.617 kb on - strand, within PGA1_c00690at 69.619 kb on - strand, within PGA1_c00690at 69.653 kb on - strand, within PGA1_c00690at 69.664 kb on - strand, within PGA1_c00690at 69.666 kb on + strand, within PGA1_c00690at 69.671 kb on + strand, within PGA1_c00690at 69.681 kb on + strand, within PGA1_c00690at 69.681 kb on + strand, within PGA1_c00690at 69.682 kb on - strand, within PGA1_c00690at 69.686 kb on + strand, within PGA1_c00690at 69.689 kb on - strand, within PGA1_c00690at 69.694 kb on - strand, within PGA1_c00690at 69.694 kb on - strand, within PGA1_c00690at 69.699 kb on - strand, within PGA1_c00690at 69.758 kb on - strand, within PGA1_c00690at 69.758 kb on - strand, within PGA1_c00690at 69.799 kb on + strandat 69.800 kb on + strandat 69.802 kb on - strandat 69.807 kb on - strandat 69.808 kb on - strandat 69.810 kb on + strandat 69.815 kb on + strandat 69.815 kb on + strandat 69.815 kb on + strandat 69.818 kb on - strandat 69.827 kb on - strandat 69.860 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 20 mM
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67,550 + -1.0
67,550 + -0.1
67,558 - -0.8
67,571 - +1.0
67,595 - +0.2
67,609 + +0.3
67,609 + -1.5
67,617 - -0.3
67,617 - -0.3
67,642 - -3.0
67,659 - +0.4
67,694 + -2.0
67,717 + PGA1_c00670 0.11 +0.2
67,718 + PGA1_c00670 0.11 -1.1
67,721 - PGA1_c00670 0.11 -1.5
67,728 + PGA1_c00670 0.12 -0.5
67,728 + PGA1_c00670 0.12 +0.3
67,787 + PGA1_c00670 0.18 -0.3
67,787 + PGA1_c00670 0.18 +1.7
67,787 + PGA1_c00670 0.18 -0.0
67,787 + PGA1_c00670 0.18 -0.4
67,787 + PGA1_c00670 0.18 -0.8
67,787 + PGA1_c00670 0.18 -0.9
67,787 + PGA1_c00670 0.18 +0.1
67,787 + PGA1_c00670 0.18 -0.8
67,787 + PGA1_c00670 0.18 +0.5
67,787 + PGA1_c00670 0.18 +0.6
67,787 + PGA1_c00670 0.18 +0.2
67,787 + PGA1_c00670 0.18 -2.6
67,787 + PGA1_c00670 0.18 -0.5
67,787 + PGA1_c00670 0.18 -0.2
67,788 - PGA1_c00670 0.18 -1.1
67,792 + PGA1_c00670 0.19 -1.0
67,795 - PGA1_c00670 0.19 +0.6
67,795 - PGA1_c00670 0.19 +0.9
67,795 - PGA1_c00670 0.19 +0.6
67,795 - PGA1_c00670 0.19 +0.2
67,795 - PGA1_c00670 0.19 +1.7
67,795 - PGA1_c00670 0.19 -0.5
67,795 - PGA1_c00670 0.19 -1.1
67,795 - PGA1_c00670 0.19 -0.2
67,795 - PGA1_c00670 0.19 -0.5
67,795 - PGA1_c00670 0.19 -0.0
67,795 - PGA1_c00670 0.19 -0.4
67,795 - PGA1_c00670 0.19 +1.7
67,795 - PGA1_c00670 0.19 +0.2
67,864 + PGA1_c00670 0.27 -0.5
67,902 - PGA1_c00670 0.31 +0.3
67,907 + PGA1_c00670 0.31 +0.2
67,912 + PGA1_c00670 0.32 +0.2
67,940 - PGA1_c00670 0.35 -0.2
67,971 + PGA1_c00670 0.39 -1.8
67,990 + PGA1_c00670 0.41 +0.1
67,990 + PGA1_c00670 0.41 -2.3
67,990 + PGA1_c00670 0.41 -0.6
67,990 + PGA1_c00670 0.41 +0.4
67,990 + PGA1_c00670 0.41 -0.9
67,998 - PGA1_c00670 0.41 -0.6
67,998 - PGA1_c00670 0.41 -0.5
68,046 + PGA1_c00670 0.47 -0.9
68,109 + PGA1_c00670 0.54 +0.6
68,120 + PGA1_c00670 0.55 -1.5
68,147 + PGA1_c00670 0.58 +0.0
68,167 + PGA1_c00670 0.60 -0.6
68,255 + PGA1_c00670 0.70 +1.1
68,288 - PGA1_c00670 0.73 -0.3
68,288 - PGA1_c00670 0.73 -0.9
68,288 - PGA1_c00670 0.73 +0.3
68,288 - PGA1_c00670 0.73 +0.3
68,303 - PGA1_c00670 0.75 +0.3
68,312 + PGA1_c00670 0.76 -0.6
68,312 + PGA1_c00670 0.76 -1.4
68,312 + PGA1_c00670 0.76 -1.2
68,330 + PGA1_c00670 0.78 +1.3
68,344 - PGA1_c00670 0.80 -0.2
68,354 - PGA1_c00670 0.81 -0.3
68,358 + PGA1_c00670 0.81 -0.1
68,366 - PGA1_c00670 0.82 -2.3
68,366 - PGA1_c00670 0.82 -0.2
68,366 - PGA1_c00670 0.82 +2.3
68,366 - PGA1_c00670 0.82 -0.0
68,367 - PGA1_c00670 0.82 -1.9
68,373 - PGA1_c00670 0.83 -0.6
68,375 + PGA1_c00670 0.83 +1.2
68,375 + PGA1_c00670 0.83 -0.6
68,377 - PGA1_c00670 0.83 +0.1
68,377 - PGA1_c00670 0.83 +0.8
68,384 - PGA1_c00670 0.84 +0.1
68,418 - PGA1_c00670 0.88 -0.5
68,423 - PGA1_c00670 0.88 -2.0
68,514 + -0.6
68,532 - -1.6
68,548 + +0.4
68,553 - -0.3
68,578 - PGA1_c00680 0.12 -0.3
68,584 - PGA1_c00680 0.14 +1.8
68,612 + PGA1_c00680 0.22 +0.9
68,835 + PGA1_c00680 0.86 +2.3
68,891 + +0.5
68,899 - +0.9
68,899 - -0.7
68,984 - -0.6
68,991 + +0.7
69,006 - -0.3
69,028 + -1.1
69,073 - PGA1_c00690 0.10 +0.5
69,076 + PGA1_c00690 0.11 -2.3
69,078 + PGA1_c00690 0.11 +0.9
69,109 + PGA1_c00690 0.14 +1.0
69,131 - PGA1_c00690 0.17 -0.1
69,201 + PGA1_c00690 0.25 -1.8
69,201 - PGA1_c00690 0.25 +1.1
69,238 - PGA1_c00690 0.29 -2.1
69,246 - PGA1_c00690 0.30 +0.6
69,292 - PGA1_c00690 0.35 -0.3
69,320 - PGA1_c00690 0.38 +0.2
69,322 + PGA1_c00690 0.38 +0.7
69,322 + PGA1_c00690 0.38 -0.3
69,322 + PGA1_c00690 0.38 -0.2
69,322 + PGA1_c00690 0.38 -0.6
69,322 + PGA1_c00690 0.38 +2.3
69,322 + PGA1_c00690 0.38 +0.7
69,322 + PGA1_c00690 0.38 +0.2
69,322 + PGA1_c00690 0.38 -0.7
69,322 + PGA1_c00690 0.38 -0.4
69,322 + PGA1_c00690 0.38 +0.5
69,322 + PGA1_c00690 0.38 +0.1
69,322 + PGA1_c00690 0.38 -1.3
69,322 + PGA1_c00690 0.38 -1.2
69,322 + PGA1_c00690 0.38 +0.3
69,322 + PGA1_c00690 0.38 -0.7
69,322 + PGA1_c00690 0.38 +1.1
69,322 + PGA1_c00690 0.38 +0.1
69,323 + PGA1_c00690 0.38 +0.7
69,330 - PGA1_c00690 0.39 -0.1
69,330 - PGA1_c00690 0.39 -1.1
69,330 - PGA1_c00690 0.39 -0.6
69,330 - PGA1_c00690 0.39 -0.0
69,378 + PGA1_c00690 0.45 +0.9
69,419 + PGA1_c00690 0.49 -0.1
69,419 + PGA1_c00690 0.49 -0.2
69,426 + PGA1_c00690 0.50 -0.1
69,426 + PGA1_c00690 0.50 +0.1
69,426 + PGA1_c00690 0.50 +0.6
69,426 + PGA1_c00690 0.50 +1.2
69,427 - PGA1_c00690 0.50 +0.2
69,434 - PGA1_c00690 0.51 +1.8
69,434 - PGA1_c00690 0.51 -1.3
69,434 - PGA1_c00690 0.51 +0.1
69,434 - PGA1_c00690 0.51 -1.3
69,457 + PGA1_c00690 0.53 -0.9
69,457 + PGA1_c00690 0.53 -1.9
69,457 + PGA1_c00690 0.53 -0.6
69,457 + PGA1_c00690 0.53 +0.2
69,462 + PGA1_c00690 0.54 -1.3
69,465 - PGA1_c00690 0.54 +0.0
69,465 - PGA1_c00690 0.54 -0.8
69,545 - PGA1_c00690 0.63 -0.3
69,592 + PGA1_c00690 0.68 -2.0
69,609 + PGA1_c00690 0.70 +0.1
69,609 + PGA1_c00690 0.70 -0.4
69,617 - PGA1_c00690 0.71 +0.5
69,617 - PGA1_c00690 0.71 -0.4
69,619 - PGA1_c00690 0.71 +1.1
69,653 - PGA1_c00690 0.75 +0.8
69,664 - PGA1_c00690 0.77 -1.1
69,666 + PGA1_c00690 0.77 +0.6
69,671 + PGA1_c00690 0.77 -1.2
69,681 + PGA1_c00690 0.78 +0.4
69,681 + PGA1_c00690 0.78 -0.6
69,682 - PGA1_c00690 0.79 +0.6
69,686 + PGA1_c00690 0.79 -0.1
69,689 - PGA1_c00690 0.79 -0.8
69,694 - PGA1_c00690 0.80 +0.5
69,694 - PGA1_c00690 0.80 +0.3
69,699 - PGA1_c00690 0.80 -1.3
69,758 - PGA1_c00690 0.87 +1.5
69,758 - PGA1_c00690 0.87 +0.6
69,799 + -0.9
69,800 + -0.9
69,802 - -0.4
69,807 - +1.0
69,808 - +0.5
69,810 + +1.5
69,815 + -1.5
69,815 + -0.8
69,815 + -0.4
69,818 - -0.4
69,827 - -0.1
69,860 + +0.8

Or see this region's nucleotide sequence