Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01430 and PGA1_262p01440 are separated by 103 nucleotides PGA1_262p01440 and PGA1_262p01450 are separated by 62 nucleotides
PGA1_262p01430: PGA1_262p01430 - hypothetical protein, at 154,683 to 156,374
_262p01430
PGA1_262p01440: PGA1_262p01440 - BCCT transporter, at 156,478 to 158,022
_262p01440
PGA1_262p01450: PGA1_262p01450 - putative membrane dipeptidase, at 158,085 to 159,077
_262p01450
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 155.479 kb on - strand, within PGA1_262p01430 at 155.509 kb on + strand, within PGA1_262p01430 at 155.517 kb on - strand, within PGA1_262p01430 at 155.527 kb on - strand, within PGA1_262p01430 at 155.678 kb on - strand, within PGA1_262p01430 at 155.798 kb on - strand, within PGA1_262p01430 at 155.877 kb on - strand, within PGA1_262p01430 at 155.991 kb on - strand, within PGA1_262p01430 at 156.028 kb on + strand, within PGA1_262p01430 at 156.081 kb on - strand, within PGA1_262p01430 at 156.091 kb on - strand, within PGA1_262p01430 at 156.091 kb on - strand, within PGA1_262p01430 at 156.105 kb on - strand, within PGA1_262p01430 at 156.119 kb on + strand, within PGA1_262p01430 at 156.207 kb on + strand at 156.207 kb on + strand at 156.215 kb on - strand at 156.299 kb on + strand at 156.412 kb on - strand at 156.445 kb on - strand at 156.491 kb on + strand at 156.495 kb on + strand at 156.547 kb on + strand at 156.633 kb on - strand, within PGA1_262p01440 at 156.660 kb on + strand, within PGA1_262p01440 at 157.022 kb on - strand, within PGA1_262p01440 at 157.093 kb on - strand, within PGA1_262p01440 at 157.215 kb on - strand, within PGA1_262p01440 at 157.344 kb on + strand, within PGA1_262p01440 at 157.464 kb on + strand, within PGA1_262p01440 at 157.469 kb on + strand, within PGA1_262p01440 at 157.469 kb on + strand, within PGA1_262p01440 at 157.535 kb on + strand, within PGA1_262p01440 at 157.762 kb on - strand, within PGA1_262p01440 at 157.831 kb on + strand, within PGA1_262p01440 at 157.928 kb on + strand at 157.928 kb on + strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.987 kb on + strand at 157.997 kb on + strand at 158.055 kb on + strand at 158.055 kb on + strand at 158.088 kb on + strand at 158.215 kb on - strand, within PGA1_262p01450 at 158.345 kb on + strand, within PGA1_262p01450 at 158.525 kb on + strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.555 kb on + strand, within PGA1_262p01450 at 158.607 kb on - strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.895 kb on - strand, within PGA1_262p01450 at 158.945 kb on - strand, within PGA1_262p01450
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 20 mM remove 155,479 - PGA1_262p01430 0.47 +0.4 155,509 + PGA1_262p01430 0.49 +2.0 155,517 - PGA1_262p01430 0.49 +2.0 155,527 - PGA1_262p01430 0.50 +0.6 155,678 - PGA1_262p01430 0.59 -1.5 155,798 - PGA1_262p01430 0.66 +0.6 155,877 - PGA1_262p01430 0.71 +1.2 155,991 - PGA1_262p01430 0.77 -0.2 156,028 + PGA1_262p01430 0.79 +0.1 156,081 - PGA1_262p01430 0.83 -0.4 156,091 - PGA1_262p01430 0.83 -0.2 156,091 - PGA1_262p01430 0.83 -1.0 156,105 - PGA1_262p01430 0.84 +0.3 156,119 + PGA1_262p01430 0.85 +1.2 156,207 + +1.2 156,207 + -0.3 156,215 - -0.8 156,299 + -0.1 156,412 - +0.3 156,445 - -0.4 156,491 + -0.6 156,495 + +0.7 156,547 + +0.3 156,633 - PGA1_262p01440 0.10 -0.6 156,660 + PGA1_262p01440 0.12 +0.2 157,022 - PGA1_262p01440 0.35 +0.2 157,093 - PGA1_262p01440 0.40 -3.1 157,215 - PGA1_262p01440 0.48 +0.7 157,344 + PGA1_262p01440 0.56 +1.2 157,464 + PGA1_262p01440 0.64 +0.6 157,469 + PGA1_262p01440 0.64 +0.6 157,469 + PGA1_262p01440 0.64 +0.5 157,535 + PGA1_262p01440 0.68 +0.7 157,762 - PGA1_262p01440 0.83 +0.8 157,831 + PGA1_262p01440 0.88 +1.3 157,928 + -0.6 157,928 + +1.9 157,936 - -0.3 157,936 - +1.0 157,936 - +0.0 157,936 - -0.8 157,987 + -1.0 157,997 + -0.9 158,055 + -0.4 158,055 + -0.6 158,088 + -0.4 158,215 - PGA1_262p01450 0.13 -1.8 158,345 + PGA1_262p01450 0.26 +1.4 158,525 + PGA1_262p01450 0.44 -0.6 158,533 - PGA1_262p01450 0.45 -0.0 158,533 - PGA1_262p01450 0.45 -1.6 158,555 + PGA1_262p01450 0.47 -0.0 158,607 - PGA1_262p01450 0.53 +0.8 158,786 + PGA1_262p01450 0.71 +0.6 158,786 + PGA1_262p01450 0.71 +0.8 158,895 - PGA1_262p01450 0.82 -0.6 158,945 - PGA1_262p01450 0.87 -1.7
Or see this region's nucleotide sequence