Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01310 and PGA1_262p01320 are separated by 47 nucleotides PGA1_262p01320 and PGA1_262p01330 overlap by 14 nucleotides PGA1_262p01330 and PGA1_262p01340 are separated by 81 nucleotides
PGA1_262p01310: PGA1_262p01310 - putative flavin-containing monooxygenase, at 141,700 to 143,187
_262p01310
PGA1_262p01320: PGA1_262p01320 - Uncharacterized protein conserved in bacteria, at 143,235 to 143,936
_262p01320
PGA1_262p01330: PGA1_262p01330 - transcriptional regulator, MarR family, at 143,923 to 144,480
_262p01330
PGA1_262p01340: PGA1_262p01340 - hypothetical protein, at 144,562 to 145,311
_262p01340
Position (kb) 143
144 Strain fitness (log2 ratio) -1
0
1
2 at 142.435 kb on - strand, within PGA1_262p01310 at 142.566 kb on + strand, within PGA1_262p01310 at 142.566 kb on + strand, within PGA1_262p01310 at 142.574 kb on - strand, within PGA1_262p01310 at 142.574 kb on - strand, within PGA1_262p01310 at 143.018 kb on - strand, within PGA1_262p01310 at 143.030 kb on - strand, within PGA1_262p01310 at 143.292 kb on - strand at 143.496 kb on - strand, within PGA1_262p01320 at 143.514 kb on + strand, within PGA1_262p01320 at 143.739 kb on + strand, within PGA1_262p01320 at 143.935 kb on + strand at 144.118 kb on + strand, within PGA1_262p01330 at 144.604 kb on - strand at 144.650 kb on + strand, within PGA1_262p01340 at 144.650 kb on + strand, within PGA1_262p01340 at 144.658 kb on - strand, within PGA1_262p01340 at 144.827 kb on + strand, within PGA1_262p01340 at 144.830 kb on - strand, within PGA1_262p01340 at 144.830 kb on - strand, within PGA1_262p01340 at 144.865 kb on - strand, within PGA1_262p01340 at 144.922 kb on + strand, within PGA1_262p01340
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 20 mM remove 142,435 - PGA1_262p01310 0.49 -0.0 142,566 + PGA1_262p01310 0.58 -0.7 142,566 + PGA1_262p01310 0.58 +0.3 142,574 - PGA1_262p01310 0.59 -0.0 142,574 - PGA1_262p01310 0.59 +1.6 143,018 - PGA1_262p01310 0.89 +0.9 143,030 - PGA1_262p01310 0.89 -0.7 143,292 - -0.7 143,496 - PGA1_262p01320 0.37 +0.8 143,514 + PGA1_262p01320 0.40 +0.2 143,739 + PGA1_262p01320 0.72 +1.8 143,935 + +0.4 144,118 + PGA1_262p01330 0.35 +0.1 144,604 - +0.4 144,650 + PGA1_262p01340 0.12 +0.7 144,650 + PGA1_262p01340 0.12 +0.5 144,658 - PGA1_262p01340 0.13 +0.3 144,827 + PGA1_262p01340 0.35 +0.1 144,830 - PGA1_262p01340 0.36 -0.4 144,830 - PGA1_262p01340 0.36 +1.0 144,865 - PGA1_262p01340 0.40 +0.6 144,922 + PGA1_262p01340 0.48 +0.0
Or see this region's nucleotide sequence