Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00880 and PGA1_262p00890 are separated by 0 nucleotides PGA1_262p00890 and PGA1_262p00900 overlap by 4 nucleotides PGA1_262p00900 and PGA1_262p00910 overlap by 4 nucleotides PGA1_262p00910 and PGA1_262p00920 are separated by 83 nucleotides
PGA1_262p00880: PGA1_262p00880 - ABC transporter, integral inner membrane component, at 98,504 to 99,547
_262p00880
PGA1_262p00890: PGA1_262p00890 - ABC transporter, integral inner membrane component, at 99,548 to 100,357
_262p00890
PGA1_262p00900: PGA1_262p00900 - ABC transporter, ATP-binding protein, at 100,354 to 101,850
_262p00900
PGA1_262p00910: PGA1_262p00910 - putative cation transort protein, at 101,847 to 102,404
_262p00910
PGA1_262p00920: PGA1_262p00920 - Membrane proteins related to metalloendopeptidases, at 102,488 to 103,174
_262p00920
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.356 kb on + strand, within PGA1_262p00880 at 99.356 kb on + strand, within PGA1_262p00880 at 99.364 kb on - strand, within PGA1_262p00880 at 99.369 kb on - strand, within PGA1_262p00880 at 99.789 kb on + strand, within PGA1_262p00890 at 99.955 kb on + strand, within PGA1_262p00890 at 100.409 kb on - strand at 100.667 kb on + strand, within PGA1_262p00900 at 100.934 kb on + strand, within PGA1_262p00900 at 101.715 kb on - strand at 101.734 kb on + strand at 101.891 kb on + strand at 101.891 kb on + strand at 101.958 kb on - strand, within PGA1_262p00910 at 102.064 kb on + strand, within PGA1_262p00910 at 102.323 kb on - strand, within PGA1_262p00910 at 102.344 kb on + strand, within PGA1_262p00910 at 102.352 kb on - strand at 102.406 kb on + strand at 102.532 kb on - strand at 102.532 kb on - strand at 102.648 kb on + strand, within PGA1_262p00920 at 102.726 kb on + strand, within PGA1_262p00920 at 102.737 kb on + strand, within PGA1_262p00920 at 102.745 kb on - strand, within PGA1_262p00920
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 20 mM remove 99,356 + PGA1_262p00880 0.82 -0.6 99,356 + PGA1_262p00880 0.82 +1.0 99,364 - PGA1_262p00880 0.82 +0.4 99,369 - PGA1_262p00880 0.83 -1.0 99,789 + PGA1_262p00890 0.30 +0.8 99,955 + PGA1_262p00890 0.50 -1.1 100,409 - -0.6 100,667 + PGA1_262p00900 0.21 -0.4 100,934 + PGA1_262p00900 0.39 +1.1 101,715 - +0.7 101,734 + +1.9 101,891 + -0.6 101,891 + -2.1 101,958 - PGA1_262p00910 0.20 +0.3 102,064 + PGA1_262p00910 0.39 +0.4 102,323 - PGA1_262p00910 0.85 -0.3 102,344 + PGA1_262p00910 0.89 -0.8 102,352 - -0.8 102,406 + +0.4 102,532 - -1.4 102,532 - +0.1 102,648 + PGA1_262p00920 0.23 -0.7 102,726 + PGA1_262p00920 0.35 -1.5 102,737 + PGA1_262p00920 0.36 -0.9 102,745 - PGA1_262p00920 0.37 -0.4
Or see this region's nucleotide sequence