Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00810

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00800 and PGA1_262p00810 are separated by 34 nucleotidesPGA1_262p00810 and PGA1_262p00820 are separated by 79 nucleotidesPGA1_262p00820 and PGA1_262p00830 are separated by 4 nucleotides PGA1_262p00800: PGA1_262p00800 - phenylacetic acid degradation protein PaaZ, at 88,772 to 90,904 _262p00800 PGA1_262p00810: PGA1_262p00810 - putative flavoprotein, HFCD family, at 90,939 to 91,508 _262p00810 PGA1_262p00820: PGA1_262p00820 - hypothetical protein, at 91,588 to 92,028 _262p00820 PGA1_262p00830: PGA1_262p00830 - hypothetical protein, at 92,033 to 93,094 _262p00830 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 89.947 kb on - strand, within PGA1_262p00800at 90.038 kb on + strand, within PGA1_262p00800at 90.057 kb on + strand, within PGA1_262p00800at 90.076 kb on + strand, within PGA1_262p00800at 90.194 kb on - strand, within PGA1_262p00800at 90.209 kb on + strand, within PGA1_262p00800at 90.224 kb on - strand, within PGA1_262p00800at 90.226 kb on + strand, within PGA1_262p00800at 90.234 kb on - strand, within PGA1_262p00800at 90.234 kb on - strand, within PGA1_262p00800at 90.345 kb on - strand, within PGA1_262p00800at 90.403 kb on + strand, within PGA1_262p00800at 90.533 kb on + strand, within PGA1_262p00800at 90.548 kb on + strand, within PGA1_262p00800at 90.548 kb on + strand, within PGA1_262p00800at 90.556 kb on - strand, within PGA1_262p00800at 90.596 kb on + strand, within PGA1_262p00800at 90.596 kb on + strand, within PGA1_262p00800at 90.599 kb on - strand, within PGA1_262p00800at 90.599 kb on - strand, within PGA1_262p00800at 90.699 kb on + strandat 90.745 kb on + strandat 90.798 kb on - strandat 90.832 kb on + strandat 90.840 kb on - strandat 90.949 kb on - strandat 90.996 kb on - strand, within PGA1_262p00810at 91.042 kb on + strand, within PGA1_262p00810at 91.042 kb on + strand, within PGA1_262p00810at 91.050 kb on - strand, within PGA1_262p00810at 91.061 kb on + strand, within PGA1_262p00810at 91.069 kb on - strand, within PGA1_262p00810at 91.069 kb on - strand, within PGA1_262p00810at 91.147 kb on - strand, within PGA1_262p00810at 91.265 kb on - strand, within PGA1_262p00810at 91.293 kb on + strand, within PGA1_262p00810at 91.375 kb on + strand, within PGA1_262p00810at 91.569 kb on - strandat 91.585 kb on + strandat 91.791 kb on - strand, within PGA1_262p00820at 91.871 kb on + strand, within PGA1_262p00820at 92.236 kb on - strand, within PGA1_262p00830at 92.374 kb on + strand, within PGA1_262p00830

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 20 mM
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89,947 - PGA1_262p00800 0.55 -0.8
90,038 + PGA1_262p00800 0.59 -0.7
90,057 + PGA1_262p00800 0.60 +0.4
90,076 + PGA1_262p00800 0.61 +0.6
90,194 - PGA1_262p00800 0.67 -0.2
90,209 + PGA1_262p00800 0.67 -0.2
90,224 - PGA1_262p00800 0.68 +0.5
90,226 + PGA1_262p00800 0.68 -0.2
90,234 - PGA1_262p00800 0.69 +0.5
90,234 - PGA1_262p00800 0.69 +1.3
90,345 - PGA1_262p00800 0.74 -0.4
90,403 + PGA1_262p00800 0.76 -0.8
90,533 + PGA1_262p00800 0.83 +1.6
90,548 + PGA1_262p00800 0.83 +0.1
90,548 + PGA1_262p00800 0.83 -1.1
90,556 - PGA1_262p00800 0.84 +0.5
90,596 + PGA1_262p00800 0.86 +2.5
90,596 + PGA1_262p00800 0.86 -0.2
90,599 - PGA1_262p00800 0.86 -0.0
90,599 - PGA1_262p00800 0.86 -0.6
90,699 + +0.8
90,745 + +0.4
90,798 - +1.3
90,832 + -0.4
90,840 - +1.0
90,949 - -0.5
90,996 - PGA1_262p00810 0.10 -0.5
91,042 + PGA1_262p00810 0.18 +1.3
91,042 + PGA1_262p00810 0.18 -0.7
91,050 - PGA1_262p00810 0.19 -0.0
91,061 + PGA1_262p00810 0.21 -0.9
91,069 - PGA1_262p00810 0.23 +1.0
91,069 - PGA1_262p00810 0.23 +0.5
91,147 - PGA1_262p00810 0.36 +1.2
91,265 - PGA1_262p00810 0.57 -0.0
91,293 + PGA1_262p00810 0.62 +0.5
91,375 + PGA1_262p00810 0.76 +1.2
91,569 - -0.9
91,585 + -2.0
91,791 - PGA1_262p00820 0.46 +1.3
91,871 + PGA1_262p00820 0.64 +1.0
92,236 - PGA1_262p00830 0.19 -1.3
92,374 + PGA1_262p00830 0.32 +0.6

Or see this region's nucleotide sequence