Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03280 and PGA1_c03290 are separated by 108 nucleotides PGA1_c03290 and PGA1_c03300 are separated by 531 nucleotides
PGA1_c03280: PGA1_c03280 - hypothetical protein, at 313,659 to 314,672
_c03280
PGA1_c03290: PGA1_c03290 - transcription elongation factor GreA, at 314,781 to 315,251
_c03290
PGA1_c03300: PGA1_c03300 - glyoxalase/bleomycin resistance protein domain-containing protein, at 315,783 to 316,166
_c03300
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 313.802 kb on - strand, within PGA1_c03280 at 313.847 kb on + strand, within PGA1_c03280 at 313.855 kb on - strand, within PGA1_c03280 at 314.042 kb on - strand, within PGA1_c03280 at 314.042 kb on - strand, within PGA1_c03280 at 314.044 kb on + strand, within PGA1_c03280 at 314.109 kb on - strand, within PGA1_c03280 at 314.121 kb on + strand, within PGA1_c03280 at 314.215 kb on + strand, within PGA1_c03280 at 314.299 kb on - strand, within PGA1_c03280 at 314.342 kb on - strand, within PGA1_c03280 at 314.380 kb on + strand, within PGA1_c03280 at 314.419 kb on - strand, within PGA1_c03280 at 314.426 kb on + strand, within PGA1_c03280 at 314.434 kb on - strand, within PGA1_c03280 at 314.451 kb on - strand, within PGA1_c03280 at 314.504 kb on + strand, within PGA1_c03280 at 314.613 kb on + strand at 314.667 kb on + strand at 314.676 kb on - strand at 314.705 kb on + strand at 314.709 kb on - strand at 314.713 kb on - strand at 314.713 kb on - strand at 314.750 kb on + strand at 314.785 kb on + strand at 314.835 kb on + strand, within PGA1_c03290 at 314.858 kb on - strand, within PGA1_c03290 at 314.870 kb on + strand, within PGA1_c03290 at 314.877 kb on + strand, within PGA1_c03290 at 314.885 kb on - strand, within PGA1_c03290 at 314.895 kb on - strand, within PGA1_c03290 at 315.135 kb on - strand, within PGA1_c03290 at 315.157 kb on + strand, within PGA1_c03290 at 315.165 kb on - strand, within PGA1_c03290 at 315.165 kb on - strand, within PGA1_c03290 at 315.216 kb on + strand at 315.232 kb on - strand at 315.329 kb on + strand at 315.359 kb on - strand at 315.372 kb on - strand at 315.374 kb on + strand at 315.473 kb on - strand at 315.513 kb on - strand at 315.519 kb on + strand at 315.533 kb on - strand at 315.542 kb on + strand at 315.542 kb on + strand at 315.550 kb on - strand at 315.550 kb on - strand at 315.553 kb on + strand at 315.561 kb on - strand at 315.569 kb on - strand at 315.649 kb on - strand at 315.655 kb on + strand at 315.655 kb on + strand at 315.711 kb on - strand at 315.740 kb on + strand at 315.760 kb on + strand at 315.858 kb on + strand, within PGA1_c03300 at 315.858 kb on + strand, within PGA1_c03300 at 315.871 kb on + strand, within PGA1_c03300 at 315.875 kb on + strand, within PGA1_c03300 at 315.896 kb on + strand, within PGA1_c03300 at 315.902 kb on - strand, within PGA1_c03300 at 315.926 kb on - strand, within PGA1_c03300 at 315.961 kb on - strand, within PGA1_c03300 at 315.966 kb on - strand, within PGA1_c03300 at 315.969 kb on + strand, within PGA1_c03300 at 315.969 kb on - strand, within PGA1_c03300 at 315.969 kb on - strand, within PGA1_c03300 at 315.989 kb on + strand, within PGA1_c03300 at 315.989 kb on - strand, within PGA1_c03300 at 315.997 kb on - strand, within PGA1_c03300 at 316.033 kb on + strand, within PGA1_c03300 at 316.034 kb on + strand, within PGA1_c03300 at 316.034 kb on + strand, within PGA1_c03300 at 316.042 kb on - strand, within PGA1_c03300 at 316.123 kb on + strand, within PGA1_c03300 at 316.123 kb on + strand, within PGA1_c03300 at 316.156 kb on - strand at 316.167 kb on + strand at 316.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 20 mM remove 313,802 - PGA1_c03280 0.14 +0.7 313,847 + PGA1_c03280 0.19 +0.3 313,855 - PGA1_c03280 0.19 -0.2 314,042 - PGA1_c03280 0.38 -0.8 314,042 - PGA1_c03280 0.38 +1.3 314,044 + PGA1_c03280 0.38 +1.6 314,109 - PGA1_c03280 0.44 -0.7 314,121 + PGA1_c03280 0.46 -0.2 314,215 + PGA1_c03280 0.55 +0.8 314,299 - PGA1_c03280 0.63 -1.4 314,342 - PGA1_c03280 0.67 -1.6 314,380 + PGA1_c03280 0.71 -1.8 314,419 - PGA1_c03280 0.75 -1.1 314,426 + PGA1_c03280 0.76 -0.6 314,434 - PGA1_c03280 0.76 -0.3 314,451 - PGA1_c03280 0.78 -0.7 314,504 + PGA1_c03280 0.83 +0.0 314,613 + -0.1 314,667 + -0.0 314,676 - -0.1 314,705 + -1.3 314,709 - -0.5 314,713 - -2.3 314,713 - +0.6 314,750 + -3.0 314,785 + -0.6 314,835 + PGA1_c03290 0.11 -1.8 314,858 - PGA1_c03290 0.16 +0.5 314,870 + PGA1_c03290 0.19 -1.0 314,877 + PGA1_c03290 0.20 +0.0 314,885 - PGA1_c03290 0.22 -0.9 314,895 - PGA1_c03290 0.24 -1.1 315,135 - PGA1_c03290 0.75 +0.0 315,157 + PGA1_c03290 0.80 -1.7 315,165 - PGA1_c03290 0.82 -1.1 315,165 - PGA1_c03290 0.82 +1.6 315,216 + -1.1 315,232 - -1.2 315,329 + -0.7 315,359 - -0.3 315,372 - -0.2 315,374 + -2.2 315,473 - +0.2 315,513 - -0.6 315,519 + -0.2 315,533 - +0.6 315,542 + +0.1 315,542 + +1.1 315,550 - -0.5 315,550 - +1.2 315,553 + -0.2 315,561 - -0.2 315,569 - -0.2 315,649 - +0.3 315,655 + -0.2 315,655 + +0.4 315,711 - -0.6 315,740 + +0.3 315,760 + -0.0 315,858 + PGA1_c03300 0.20 +0.5 315,858 + PGA1_c03300 0.20 -0.6 315,871 + PGA1_c03300 0.23 -1.6 315,875 + PGA1_c03300 0.24 +0.1 315,896 + PGA1_c03300 0.29 +1.4 315,902 - PGA1_c03300 0.31 +0.4 315,926 - PGA1_c03300 0.37 +0.7 315,961 - PGA1_c03300 0.46 -1.0 315,966 - PGA1_c03300 0.48 -0.2 315,969 + PGA1_c03300 0.48 -0.6 315,969 - PGA1_c03300 0.48 +0.3 315,969 - PGA1_c03300 0.48 +3.0 315,989 + PGA1_c03300 0.54 +0.3 315,989 - PGA1_c03300 0.54 -0.7 315,997 - PGA1_c03300 0.56 -0.6 316,033 + PGA1_c03300 0.65 +0.6 316,034 + PGA1_c03300 0.65 -0.6 316,034 + PGA1_c03300 0.65 +1.6 316,042 - PGA1_c03300 0.67 +0.2 316,123 + PGA1_c03300 0.89 -0.1 316,123 + PGA1_c03300 0.89 -2.3 316,156 - -0.4 316,167 + +0.8 316,169 - -0.1
Or see this region's nucleotide sequence