Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02700

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02690 and PGA1_c02700 are separated by 172 nucleotidesPGA1_c02700 and PGA1_c02710 are separated by 267 nucleotides PGA1_c02690: PGA1_c02690 - Hemolysin-type calcium-binding repeat (2 copies)., at 254,777 to 257,686 _c02690 PGA1_c02700: PGA1_c02700 - putative HTH-type transcriptional regulator, at 257,859 to 258,872 _c02700 PGA1_c02710: PGA1_c02710 - sn-glycerol-3-phosphate-binding periplasmic protein ugpB, at 259,140 to 260,441 _c02710 Position (kb) 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 256.859 kb on + strand, within PGA1_c02690at 256.859 kb on + strand, within PGA1_c02690at 256.859 kb on + strand, within PGA1_c02690at 256.859 kb on + strand, within PGA1_c02690at 256.859 kb on + strand, within PGA1_c02690at 256.866 kb on - strand, within PGA1_c02690at 256.867 kb on - strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.884 kb on + strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.892 kb on - strand, within PGA1_c02690at 256.894 kb on + strand, within PGA1_c02690at 256.894 kb on + strand, within PGA1_c02690at 256.894 kb on + strand, within PGA1_c02690at 256.894 kb on + strand, within PGA1_c02690at 256.894 kb on + strand, within PGA1_c02690at 256.894 kb on + strand, within PGA1_c02690at 256.894 kb on + strand, within PGA1_c02690at 256.894 kb on + strand, within PGA1_c02690at 256.902 kb on - strand, within PGA1_c02690at 256.902 kb on - strand, within PGA1_c02690at 256.902 kb on - strand, within PGA1_c02690at 256.902 kb on - strand, within PGA1_c02690at 256.902 kb on - strand, within PGA1_c02690at 256.902 kb on - strand, within PGA1_c02690at 256.909 kb on - strand, within PGA1_c02690at 256.923 kb on - strand, within PGA1_c02690at 256.936 kb on - strand, within PGA1_c02690at 256.983 kb on - strand, within PGA1_c02690at 257.004 kb on - strand, within PGA1_c02690at 257.051 kb on - strand, within PGA1_c02690at 257.061 kb on + strand, within PGA1_c02690at 257.083 kb on + strand, within PGA1_c02690at 257.136 kb on + strand, within PGA1_c02690at 257.136 kb on + strand, within PGA1_c02690at 257.136 kb on + strand, within PGA1_c02690at 257.163 kb on + strand, within PGA1_c02690at 257.165 kb on + strand, within PGA1_c02690at 257.173 kb on - strand, within PGA1_c02690at 257.175 kb on + strand, within PGA1_c02690at 257.177 kb on + strand, within PGA1_c02690at 257.177 kb on + strand, within PGA1_c02690at 257.209 kb on - strand, within PGA1_c02690at 257.219 kb on - strand, within PGA1_c02690at 257.234 kb on + strand, within PGA1_c02690at 257.290 kb on + strand, within PGA1_c02690at 257.301 kb on + strand, within PGA1_c02690at 257.377 kb on - strand, within PGA1_c02690at 257.406 kb on + strandat 257.431 kb on - strandat 257.445 kb on + strandat 257.448 kb on + strandat 257.453 kb on + strandat 257.453 kb on + strandat 257.456 kb on - strandat 257.458 kb on + strandat 257.458 kb on + strandat 257.458 kb on + strandat 257.466 kb on - strandat 257.466 kb on - strandat 257.466 kb on - strandat 257.466 kb on - strandat 257.466 kb on - strandat 257.466 kb on - strandat 257.473 kb on + strandat 257.520 kb on + strandat 257.527 kb on + strandat 257.535 kb on - strandat 257.544 kb on + strandat 257.547 kb on - strandat 257.552 kb on - strandat 257.647 kb on - strandat 257.649 kb on + strandat 257.649 kb on + strandat 257.649 kb on + strandat 257.657 kb on - strandat 257.657 kb on - strandat 257.664 kb on + strandat 257.677 kb on - strandat 257.680 kb on + strandat 257.694 kb on - strandat 257.713 kb on - strandat 257.720 kb on + strandat 257.775 kb on - strandat 257.791 kb on - strandat 257.808 kb on + strandat 257.808 kb on + strandat 257.848 kb on + strandat 257.866 kb on + strandat 257.866 kb on + strandat 257.902 kb on + strandat 257.904 kb on + strandat 257.904 kb on + strandat 257.912 kb on - strandat 257.916 kb on - strandat 257.936 kb on + strandat 257.936 kb on + strandat 257.936 kb on + strandat 257.936 kb on + strandat 257.936 kb on + strandat 257.936 kb on + strandat 257.936 kb on + strandat 257.936 kb on + strandat 257.944 kb on - strandat 257.944 kb on - strandat 257.944 kb on - strandat 257.944 kb on - strandat 257.944 kb on - strandat 257.946 kb on + strandat 257.959 kb on - strandat 258.029 kb on + strand, within PGA1_c02700at 258.029 kb on + strand, within PGA1_c02700at 258.037 kb on - strand, within PGA1_c02700at 258.048 kb on + strand, within PGA1_c02700at 258.078 kb on + strand, within PGA1_c02700at 258.136 kb on + strand, within PGA1_c02700at 258.146 kb on + strand, within PGA1_c02700at 258.216 kb on + strand, within PGA1_c02700at 258.268 kb on - strand, within PGA1_c02700at 258.271 kb on - strand, within PGA1_c02700at 258.294 kb on + strand, within PGA1_c02700at 258.294 kb on + strand, within PGA1_c02700at 258.302 kb on - strand, within PGA1_c02700at 258.345 kb on - strand, within PGA1_c02700at 258.376 kb on + strand, within PGA1_c02700at 258.376 kb on - strand, within PGA1_c02700at 258.412 kb on - strand, within PGA1_c02700at 258.421 kb on + strand, within PGA1_c02700at 258.429 kb on - strand, within PGA1_c02700at 258.431 kb on + strand, within PGA1_c02700at 258.501 kb on + strand, within PGA1_c02700at 258.509 kb on - strand, within PGA1_c02700at 258.515 kb on - strand, within PGA1_c02700at 258.533 kb on + strand, within PGA1_c02700at 258.541 kb on - strand, within PGA1_c02700at 258.562 kb on - strand, within PGA1_c02700at 258.593 kb on + strand, within PGA1_c02700at 258.600 kb on + strand, within PGA1_c02700at 258.601 kb on - strand, within PGA1_c02700at 258.609 kb on - strand, within PGA1_c02700at 258.620 kb on - strand, within PGA1_c02700at 258.653 kb on + strand, within PGA1_c02700at 258.688 kb on + strand, within PGA1_c02700at 258.718 kb on + strand, within PGA1_c02700at 258.726 kb on - strand, within PGA1_c02700at 258.733 kb on - strand, within PGA1_c02700at 258.746 kb on + strand, within PGA1_c02700at 258.764 kb on + strand, within PGA1_c02700at 258.877 kb on + strandat 258.920 kb on - strandat 258.939 kb on - strandat 258.939 kb on - strandat 258.982 kb on - strandat 259.026 kb on - strandat 259.032 kb on + strandat 259.032 kb on + strandat 259.034 kb on + strandat 259.042 kb on - strandat 259.049 kb on + strandat 259.074 kb on - strandat 259.090 kb on + strandat 259.125 kb on - strandat 259.191 kb on + strandat 259.226 kb on + strandat 259.244 kb on + strandat 259.252 kb on - strandat 259.279 kb on + strand, within PGA1_c02710at 259.324 kb on + strand, within PGA1_c02710at 259.324 kb on + strand, within PGA1_c02710at 259.376 kb on + strand, within PGA1_c02710at 259.384 kb on - strand, within PGA1_c02710at 259.421 kb on - strand, within PGA1_c02710at 259.443 kb on - strand, within PGA1_c02710at 259.496 kb on + strand, within PGA1_c02710at 259.503 kb on + strand, within PGA1_c02710at 259.551 kb on + strand, within PGA1_c02710at 259.553 kb on + strand, within PGA1_c02710at 259.553 kb on + strand, within PGA1_c02710at 259.561 kb on + strand, within PGA1_c02710at 259.561 kb on + strand, within PGA1_c02710at 259.569 kb on - strand, within PGA1_c02710at 259.569 kb on - strand, within PGA1_c02710at 259.569 kb on - strand, within PGA1_c02710at 259.617 kb on - strand, within PGA1_c02710at 259.620 kb on + strand, within PGA1_c02710at 259.645 kb on + strand, within PGA1_c02710at 259.678 kb on + strand, within PGA1_c02710at 259.693 kb on + strand, within PGA1_c02710at 259.711 kb on - strand, within PGA1_c02710at 259.767 kb on + strand, within PGA1_c02710at 259.767 kb on + strand, within PGA1_c02710at 259.767 kb on + strand, within PGA1_c02710at 259.767 kb on + strand, within PGA1_c02710at 259.809 kb on - strand, within PGA1_c02710

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 20 mM
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256,859 + PGA1_c02690 0.72 +0.7
256,859 + PGA1_c02690 0.72 -0.9
256,859 + PGA1_c02690 0.72 +0.3
256,859 + PGA1_c02690 0.72 +0.7
256,859 + PGA1_c02690 0.72 -2.1
256,866 - PGA1_c02690 0.72 +0.4
256,867 - PGA1_c02690 0.72 -0.3
256,884 + PGA1_c02690 0.72 -0.2
256,884 + PGA1_c02690 0.72 +0.3
256,884 + PGA1_c02690 0.72 +0.6
256,884 + PGA1_c02690 0.72 -0.4
256,884 + PGA1_c02690 0.72 +0.7
256,884 + PGA1_c02690 0.72 -0.7
256,884 + PGA1_c02690 0.72 -0.8
256,884 + PGA1_c02690 0.72 -0.0
256,884 + PGA1_c02690 0.72 -0.4
256,884 + PGA1_c02690 0.72 +1.3
256,884 + PGA1_c02690 0.72 -0.0
256,884 + PGA1_c02690 0.72 -0.9
256,884 + PGA1_c02690 0.72 -0.1
256,884 + PGA1_c02690 0.72 +0.1
256,884 + PGA1_c02690 0.72 +1.4
256,884 + PGA1_c02690 0.72 +2.0
256,884 + PGA1_c02690 0.72 +0.2
256,884 + PGA1_c02690 0.72 -1.3
256,884 + PGA1_c02690 0.72 -0.7
256,884 + PGA1_c02690 0.72 +0.7
256,884 + PGA1_c02690 0.72 -0.7
256,884 + PGA1_c02690 0.72 -0.5
256,884 + PGA1_c02690 0.72 -0.5
256,892 - PGA1_c02690 0.73 -0.8
256,892 - PGA1_c02690 0.73 +0.9
256,892 - PGA1_c02690 0.73 -1.5
256,892 - PGA1_c02690 0.73 +1.3
256,892 - PGA1_c02690 0.73 -0.3
256,892 - PGA1_c02690 0.73 +0.1
256,892 - PGA1_c02690 0.73 +0.0
256,892 - PGA1_c02690 0.73 +0.4
256,892 - PGA1_c02690 0.73 -0.2
256,892 - PGA1_c02690 0.73 +0.6
256,892 - PGA1_c02690 0.73 +0.9
256,894 + PGA1_c02690 0.73 -0.4
256,894 + PGA1_c02690 0.73 +0.4
256,894 + PGA1_c02690 0.73 +0.4
256,894 + PGA1_c02690 0.73 -0.1
256,894 + PGA1_c02690 0.73 -0.3
256,894 + PGA1_c02690 0.73 +1.2
256,894 + PGA1_c02690 0.73 +0.5
256,894 + PGA1_c02690 0.73 -0.1
256,902 - PGA1_c02690 0.73 +0.8
256,902 - PGA1_c02690 0.73 +1.0
256,902 - PGA1_c02690 0.73 +0.7
256,902 - PGA1_c02690 0.73 +1.2
256,902 - PGA1_c02690 0.73 +0.7
256,902 - PGA1_c02690 0.73 +1.9
256,909 - PGA1_c02690 0.73 +0.7
256,923 - PGA1_c02690 0.74 -0.7
256,936 - PGA1_c02690 0.74 +0.2
256,983 - PGA1_c02690 0.76 -0.3
257,004 - PGA1_c02690 0.77 +0.4
257,051 - PGA1_c02690 0.78 +0.7
257,061 + PGA1_c02690 0.78 -0.5
257,083 + PGA1_c02690 0.79 -1.5
257,136 + PGA1_c02690 0.81 +0.7
257,136 + PGA1_c02690 0.81 +0.4
257,136 + PGA1_c02690 0.81 -0.3
257,163 + PGA1_c02690 0.82 -0.0
257,165 + PGA1_c02690 0.82 -1.1
257,173 - PGA1_c02690 0.82 +0.4
257,175 + PGA1_c02690 0.82 +0.7
257,177 + PGA1_c02690 0.82 +0.5
257,177 + PGA1_c02690 0.82 +1.0
257,209 - PGA1_c02690 0.84 +0.7
257,219 - PGA1_c02690 0.84 -0.6
257,234 + PGA1_c02690 0.84 +1.2
257,290 + PGA1_c02690 0.86 -0.1
257,301 + PGA1_c02690 0.87 -0.4
257,377 - PGA1_c02690 0.89 +0.1
257,406 + -0.1
257,431 - -0.8
257,445 + -1.3
257,448 + -3.6
257,453 + -1.0
257,453 + +0.1
257,456 - -0.0
257,458 + +0.2
257,458 + -0.3
257,458 + +0.0
257,466 - -2.2
257,466 - +0.8
257,466 - +0.2
257,466 - +1.1
257,466 - +1.1
257,466 - +0.1
257,473 + -0.3
257,520 + -0.5
257,527 + +0.9
257,535 - -0.7
257,544 + +1.0
257,547 - -0.5
257,552 - +0.8
257,647 - +0.0
257,649 + +1.2
257,649 + +0.7
257,649 + -0.3
257,657 - +0.3
257,657 - +0.9
257,664 + +1.7
257,677 - +1.1
257,680 + +0.2
257,694 - -0.1
257,713 - +0.7
257,720 + -1.0
257,775 - -1.2
257,791 - +0.2
257,808 + -0.7
257,808 + -0.5
257,848 + -0.1
257,866 + +0.2
257,866 + -1.0
257,902 + -0.3
257,904 + -2.0
257,904 + -0.9
257,912 - -0.9
257,916 - +0.2
257,936 + -1.7
257,936 + -0.3
257,936 + -1.0
257,936 + -0.5
257,936 + -1.1
257,936 + -0.5
257,936 + -1.7
257,936 + -0.7
257,944 - -1.0
257,944 - -1.3
257,944 - -3.0
257,944 - -2.7
257,944 - -0.1
257,946 + -1.7
257,959 - -1.8
258,029 + PGA1_c02700 0.17 +0.1
258,029 + PGA1_c02700 0.17 +1.2
258,037 - PGA1_c02700 0.18 -1.3
258,048 + PGA1_c02700 0.19 -2.3
258,078 + PGA1_c02700 0.22 -1.3
258,136 + PGA1_c02700 0.27 -2.0
258,146 + PGA1_c02700 0.28 -0.4
258,216 + PGA1_c02700 0.35 -0.2
258,268 - PGA1_c02700 0.40 -0.6
258,271 - PGA1_c02700 0.41 -1.7
258,294 + PGA1_c02700 0.43 -1.4
258,294 + PGA1_c02700 0.43 -1.5
258,302 - PGA1_c02700 0.44 -1.2
258,345 - PGA1_c02700 0.48 +0.4
258,376 + PGA1_c02700 0.51 -0.7
258,376 - PGA1_c02700 0.51 -0.0
258,412 - PGA1_c02700 0.55 -0.5
258,421 + PGA1_c02700 0.55 -1.7
258,429 - PGA1_c02700 0.56 -0.8
258,431 + PGA1_c02700 0.56 -1.0
258,501 + PGA1_c02700 0.63 -1.1
258,509 - PGA1_c02700 0.64 -0.1
258,515 - PGA1_c02700 0.65 -1.4
258,533 + PGA1_c02700 0.66 -1.2
258,541 - PGA1_c02700 0.67 -0.1
258,562 - PGA1_c02700 0.69 -0.6
258,593 + PGA1_c02700 0.72 -2.6
258,600 + PGA1_c02700 0.73 -1.5
258,601 - PGA1_c02700 0.73 -0.3
258,609 - PGA1_c02700 0.74 -0.6
258,620 - PGA1_c02700 0.75 -0.7
258,653 + PGA1_c02700 0.78 -3.0
258,688 + PGA1_c02700 0.82 -0.3
258,718 + PGA1_c02700 0.85 -0.4
258,726 - PGA1_c02700 0.86 -1.5
258,733 - PGA1_c02700 0.86 -1.3
258,746 + PGA1_c02700 0.87 +0.1
258,764 + PGA1_c02700 0.89 -2.7
258,877 + -0.3
258,920 - -1.1
258,939 - -1.8
258,939 - -0.2
258,982 - +1.3
259,026 - -1.5
259,032 + -0.2
259,032 + +0.0
259,034 + -0.7
259,042 - -2.1
259,049 + +0.8
259,074 - +0.2
259,090 + +0.3
259,125 - -0.8
259,191 + -0.1
259,226 + +0.1
259,244 + -1.0
259,252 - -0.2
259,279 + PGA1_c02710 0.11 +0.6
259,324 + PGA1_c02710 0.14 +2.4
259,324 + PGA1_c02710 0.14 +0.5
259,376 + PGA1_c02710 0.18 -1.6
259,384 - PGA1_c02710 0.19 +0.2
259,421 - PGA1_c02710 0.22 +1.7
259,443 - PGA1_c02710 0.23 -0.8
259,496 + PGA1_c02710 0.27 -0.9
259,503 + PGA1_c02710 0.28 +0.3
259,551 + PGA1_c02710 0.32 -0.1
259,553 + PGA1_c02710 0.32 +0.0
259,553 + PGA1_c02710 0.32 -0.7
259,561 + PGA1_c02710 0.32 -0.7
259,561 + PGA1_c02710 0.32 -0.4
259,569 - PGA1_c02710 0.33 +1.8
259,569 - PGA1_c02710 0.33 -1.3
259,569 - PGA1_c02710 0.33 +0.7
259,617 - PGA1_c02710 0.37 +0.8
259,620 + PGA1_c02710 0.37 +1.0
259,645 + PGA1_c02710 0.39 -2.5
259,678 + PGA1_c02710 0.41 +1.3
259,693 + PGA1_c02710 0.42 +1.5
259,711 - PGA1_c02710 0.44 +1.5
259,767 + PGA1_c02710 0.48 -0.2
259,767 + PGA1_c02710 0.48 -0.8
259,767 + PGA1_c02710 0.48 +1.0
259,767 + PGA1_c02710 0.48 -0.4
259,809 - PGA1_c02710 0.51 -0.2

Or see this region's nucleotide sequence