Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02690 and PGA1_c02700 are separated by 172 nucleotides PGA1_c02700 and PGA1_c02710 are separated by 267 nucleotides
PGA1_c02690: PGA1_c02690 - Hemolysin-type calcium-binding repeat (2 copies)., at 254,777 to 257,686
_c02690
PGA1_c02700: PGA1_c02700 - putative HTH-type transcriptional regulator, at 257,859 to 258,872
_c02700
PGA1_c02710: PGA1_c02710 - sn-glycerol-3-phosphate-binding periplasmic protein ugpB, at 259,140 to 260,441
_c02710
Position (kb) 257
258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 256.859 kb on + strand, within PGA1_c02690 at 256.859 kb on + strand, within PGA1_c02690 at 256.859 kb on + strand, within PGA1_c02690 at 256.859 kb on + strand, within PGA1_c02690 at 256.859 kb on + strand, within PGA1_c02690 at 256.866 kb on - strand, within PGA1_c02690 at 256.867 kb on - strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.909 kb on - strand, within PGA1_c02690 at 256.923 kb on - strand, within PGA1_c02690 at 256.936 kb on - strand, within PGA1_c02690 at 256.983 kb on - strand, within PGA1_c02690 at 257.004 kb on - strand, within PGA1_c02690 at 257.051 kb on - strand, within PGA1_c02690 at 257.061 kb on + strand, within PGA1_c02690 at 257.083 kb on + strand, within PGA1_c02690 at 257.136 kb on + strand, within PGA1_c02690 at 257.136 kb on + strand, within PGA1_c02690 at 257.136 kb on + strand, within PGA1_c02690 at 257.163 kb on + strand, within PGA1_c02690 at 257.165 kb on + strand, within PGA1_c02690 at 257.173 kb on - strand, within PGA1_c02690 at 257.175 kb on + strand, within PGA1_c02690 at 257.177 kb on + strand, within PGA1_c02690 at 257.177 kb on + strand, within PGA1_c02690 at 257.209 kb on - strand, within PGA1_c02690 at 257.219 kb on - strand, within PGA1_c02690 at 257.234 kb on + strand, within PGA1_c02690 at 257.290 kb on + strand, within PGA1_c02690 at 257.301 kb on + strand, within PGA1_c02690 at 257.377 kb on - strand, within PGA1_c02690 at 257.406 kb on + strand at 257.431 kb on - strand at 257.445 kb on + strand at 257.448 kb on + strand at 257.453 kb on + strand at 257.453 kb on + strand at 257.456 kb on - strand at 257.458 kb on + strand at 257.458 kb on + strand at 257.458 kb on + strand at 257.466 kb on - strand at 257.466 kb on - strand at 257.466 kb on - strand at 257.466 kb on - strand at 257.466 kb on - strand at 257.466 kb on - strand at 257.473 kb on + strand at 257.520 kb on + strand at 257.527 kb on + strand at 257.535 kb on - strand at 257.544 kb on + strand at 257.547 kb on - strand at 257.552 kb on - strand at 257.647 kb on - strand at 257.649 kb on + strand at 257.649 kb on + strand at 257.649 kb on + strand at 257.657 kb on - strand at 257.657 kb on - strand at 257.664 kb on + strand at 257.677 kb on - strand at 257.680 kb on + strand at 257.694 kb on - strand at 257.713 kb on - strand at 257.720 kb on + strand at 257.775 kb on - strand at 257.791 kb on - strand at 257.808 kb on + strand at 257.808 kb on + strand at 257.848 kb on + strand at 257.866 kb on + strand at 257.866 kb on + strand at 257.902 kb on + strand at 257.904 kb on + strand at 257.904 kb on + strand at 257.912 kb on - strand at 257.916 kb on - strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.944 kb on - strand at 257.944 kb on - strand at 257.944 kb on - strand at 257.944 kb on - strand at 257.944 kb on - strand at 257.946 kb on + strand at 257.959 kb on - strand at 258.029 kb on + strand, within PGA1_c02700 at 258.029 kb on + strand, within PGA1_c02700 at 258.037 kb on - strand, within PGA1_c02700 at 258.048 kb on + strand, within PGA1_c02700 at 258.078 kb on + strand, within PGA1_c02700 at 258.136 kb on + strand, within PGA1_c02700 at 258.146 kb on + strand, within PGA1_c02700 at 258.216 kb on + strand, within PGA1_c02700 at 258.268 kb on - strand, within PGA1_c02700 at 258.271 kb on - strand, within PGA1_c02700 at 258.294 kb on + strand, within PGA1_c02700 at 258.294 kb on + strand, within PGA1_c02700 at 258.302 kb on - strand, within PGA1_c02700 at 258.345 kb on - strand, within PGA1_c02700 at 258.376 kb on + strand, within PGA1_c02700 at 258.376 kb on - strand, within PGA1_c02700 at 258.412 kb on - strand, within PGA1_c02700 at 258.421 kb on + strand, within PGA1_c02700 at 258.429 kb on - strand, within PGA1_c02700 at 258.431 kb on + strand, within PGA1_c02700 at 258.501 kb on + strand, within PGA1_c02700 at 258.509 kb on - strand, within PGA1_c02700 at 258.515 kb on - strand, within PGA1_c02700 at 258.533 kb on + strand, within PGA1_c02700 at 258.541 kb on - strand, within PGA1_c02700 at 258.562 kb on - strand, within PGA1_c02700 at 258.593 kb on + strand, within PGA1_c02700 at 258.600 kb on + strand, within PGA1_c02700 at 258.601 kb on - strand, within PGA1_c02700 at 258.609 kb on - strand, within PGA1_c02700 at 258.620 kb on - strand, within PGA1_c02700 at 258.653 kb on + strand, within PGA1_c02700 at 258.688 kb on + strand, within PGA1_c02700 at 258.718 kb on + strand, within PGA1_c02700 at 258.726 kb on - strand, within PGA1_c02700 at 258.733 kb on - strand, within PGA1_c02700 at 258.746 kb on + strand, within PGA1_c02700 at 258.764 kb on + strand, within PGA1_c02700 at 258.877 kb on + strand at 258.920 kb on - strand at 258.939 kb on - strand at 258.939 kb on - strand at 258.982 kb on - strand at 259.026 kb on - strand at 259.032 kb on + strand at 259.032 kb on + strand at 259.034 kb on + strand at 259.042 kb on - strand at 259.049 kb on + strand at 259.074 kb on - strand at 259.090 kb on + strand at 259.125 kb on - strand at 259.191 kb on + strand at 259.226 kb on + strand at 259.244 kb on + strand at 259.252 kb on - strand at 259.279 kb on + strand, within PGA1_c02710 at 259.324 kb on + strand, within PGA1_c02710 at 259.324 kb on + strand, within PGA1_c02710 at 259.376 kb on + strand, within PGA1_c02710 at 259.384 kb on - strand, within PGA1_c02710 at 259.421 kb on - strand, within PGA1_c02710 at 259.443 kb on - strand, within PGA1_c02710 at 259.496 kb on + strand, within PGA1_c02710 at 259.503 kb on + strand, within PGA1_c02710 at 259.551 kb on + strand, within PGA1_c02710 at 259.553 kb on + strand, within PGA1_c02710 at 259.553 kb on + strand, within PGA1_c02710 at 259.561 kb on + strand, within PGA1_c02710 at 259.561 kb on + strand, within PGA1_c02710 at 259.569 kb on - strand, within PGA1_c02710 at 259.569 kb on - strand, within PGA1_c02710 at 259.569 kb on - strand, within PGA1_c02710 at 259.617 kb on - strand, within PGA1_c02710 at 259.620 kb on + strand, within PGA1_c02710 at 259.645 kb on + strand, within PGA1_c02710 at 259.678 kb on + strand, within PGA1_c02710 at 259.693 kb on + strand, within PGA1_c02710 at 259.711 kb on - strand, within PGA1_c02710 at 259.767 kb on + strand, within PGA1_c02710 at 259.767 kb on + strand, within PGA1_c02710 at 259.767 kb on + strand, within PGA1_c02710 at 259.767 kb on + strand, within PGA1_c02710 at 259.809 kb on - strand, within PGA1_c02710
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 20 mM remove 256,859 + PGA1_c02690 0.72 +0.7 256,859 + PGA1_c02690 0.72 -0.9 256,859 + PGA1_c02690 0.72 +0.3 256,859 + PGA1_c02690 0.72 +0.7 256,859 + PGA1_c02690 0.72 -2.1 256,866 - PGA1_c02690 0.72 +0.4 256,867 - PGA1_c02690 0.72 -0.3 256,884 + PGA1_c02690 0.72 -0.2 256,884 + PGA1_c02690 0.72 +0.3 256,884 + PGA1_c02690 0.72 +0.6 256,884 + PGA1_c02690 0.72 -0.4 256,884 + PGA1_c02690 0.72 +0.7 256,884 + PGA1_c02690 0.72 -0.7 256,884 + PGA1_c02690 0.72 -0.8 256,884 + PGA1_c02690 0.72 -0.0 256,884 + PGA1_c02690 0.72 -0.4 256,884 + PGA1_c02690 0.72 +1.3 256,884 + PGA1_c02690 0.72 -0.0 256,884 + PGA1_c02690 0.72 -0.9 256,884 + PGA1_c02690 0.72 -0.1 256,884 + PGA1_c02690 0.72 +0.1 256,884 + PGA1_c02690 0.72 +1.4 256,884 + PGA1_c02690 0.72 +2.0 256,884 + PGA1_c02690 0.72 +0.2 256,884 + PGA1_c02690 0.72 -1.3 256,884 + PGA1_c02690 0.72 -0.7 256,884 + PGA1_c02690 0.72 +0.7 256,884 + PGA1_c02690 0.72 -0.7 256,884 + PGA1_c02690 0.72 -0.5 256,884 + PGA1_c02690 0.72 -0.5 256,892 - PGA1_c02690 0.73 -0.8 256,892 - PGA1_c02690 0.73 +0.9 256,892 - PGA1_c02690 0.73 -1.5 256,892 - PGA1_c02690 0.73 +1.3 256,892 - PGA1_c02690 0.73 -0.3 256,892 - PGA1_c02690 0.73 +0.1 256,892 - PGA1_c02690 0.73 +0.0 256,892 - PGA1_c02690 0.73 +0.4 256,892 - PGA1_c02690 0.73 -0.2 256,892 - PGA1_c02690 0.73 +0.6 256,892 - PGA1_c02690 0.73 +0.9 256,894 + PGA1_c02690 0.73 -0.4 256,894 + PGA1_c02690 0.73 +0.4 256,894 + PGA1_c02690 0.73 +0.4 256,894 + PGA1_c02690 0.73 -0.1 256,894 + PGA1_c02690 0.73 -0.3 256,894 + PGA1_c02690 0.73 +1.2 256,894 + PGA1_c02690 0.73 +0.5 256,894 + PGA1_c02690 0.73 -0.1 256,902 - PGA1_c02690 0.73 +0.8 256,902 - PGA1_c02690 0.73 +1.0 256,902 - PGA1_c02690 0.73 +0.7 256,902 - PGA1_c02690 0.73 +1.2 256,902 - PGA1_c02690 0.73 +0.7 256,902 - PGA1_c02690 0.73 +1.9 256,909 - PGA1_c02690 0.73 +0.7 256,923 - PGA1_c02690 0.74 -0.7 256,936 - PGA1_c02690 0.74 +0.2 256,983 - PGA1_c02690 0.76 -0.3 257,004 - PGA1_c02690 0.77 +0.4 257,051 - PGA1_c02690 0.78 +0.7 257,061 + PGA1_c02690 0.78 -0.5 257,083 + PGA1_c02690 0.79 -1.5 257,136 + PGA1_c02690 0.81 +0.7 257,136 + PGA1_c02690 0.81 +0.4 257,136 + PGA1_c02690 0.81 -0.3 257,163 + PGA1_c02690 0.82 -0.0 257,165 + PGA1_c02690 0.82 -1.1 257,173 - PGA1_c02690 0.82 +0.4 257,175 + PGA1_c02690 0.82 +0.7 257,177 + PGA1_c02690 0.82 +0.5 257,177 + PGA1_c02690 0.82 +1.0 257,209 - PGA1_c02690 0.84 +0.7 257,219 - PGA1_c02690 0.84 -0.6 257,234 + PGA1_c02690 0.84 +1.2 257,290 + PGA1_c02690 0.86 -0.1 257,301 + PGA1_c02690 0.87 -0.4 257,377 - PGA1_c02690 0.89 +0.1 257,406 + -0.1 257,431 - -0.8 257,445 + -1.3 257,448 + -3.6 257,453 + -1.0 257,453 + +0.1 257,456 - -0.0 257,458 + +0.2 257,458 + -0.3 257,458 + +0.0 257,466 - -2.2 257,466 - +0.8 257,466 - +0.2 257,466 - +1.1 257,466 - +1.1 257,466 - +0.1 257,473 + -0.3 257,520 + -0.5 257,527 + +0.9 257,535 - -0.7 257,544 + +1.0 257,547 - -0.5 257,552 - +0.8 257,647 - +0.0 257,649 + +1.2 257,649 + +0.7 257,649 + -0.3 257,657 - +0.3 257,657 - +0.9 257,664 + +1.7 257,677 - +1.1 257,680 + +0.2 257,694 - -0.1 257,713 - +0.7 257,720 + -1.0 257,775 - -1.2 257,791 - +0.2 257,808 + -0.7 257,808 + -0.5 257,848 + -0.1 257,866 + +0.2 257,866 + -1.0 257,902 + -0.3 257,904 + -2.0 257,904 + -0.9 257,912 - -0.9 257,916 - +0.2 257,936 + -1.7 257,936 + -0.3 257,936 + -1.0 257,936 + -0.5 257,936 + -1.1 257,936 + -0.5 257,936 + -1.7 257,936 + -0.7 257,944 - -1.0 257,944 - -1.3 257,944 - -3.0 257,944 - -2.7 257,944 - -0.1 257,946 + -1.7 257,959 - -1.8 258,029 + PGA1_c02700 0.17 +0.1 258,029 + PGA1_c02700 0.17 +1.2 258,037 - PGA1_c02700 0.18 -1.3 258,048 + PGA1_c02700 0.19 -2.3 258,078 + PGA1_c02700 0.22 -1.3 258,136 + PGA1_c02700 0.27 -2.0 258,146 + PGA1_c02700 0.28 -0.4 258,216 + PGA1_c02700 0.35 -0.2 258,268 - PGA1_c02700 0.40 -0.6 258,271 - PGA1_c02700 0.41 -1.7 258,294 + PGA1_c02700 0.43 -1.4 258,294 + PGA1_c02700 0.43 -1.5 258,302 - PGA1_c02700 0.44 -1.2 258,345 - PGA1_c02700 0.48 +0.4 258,376 + PGA1_c02700 0.51 -0.7 258,376 - PGA1_c02700 0.51 -0.0 258,412 - PGA1_c02700 0.55 -0.5 258,421 + PGA1_c02700 0.55 -1.7 258,429 - PGA1_c02700 0.56 -0.8 258,431 + PGA1_c02700 0.56 -1.0 258,501 + PGA1_c02700 0.63 -1.1 258,509 - PGA1_c02700 0.64 -0.1 258,515 - PGA1_c02700 0.65 -1.4 258,533 + PGA1_c02700 0.66 -1.2 258,541 - PGA1_c02700 0.67 -0.1 258,562 - PGA1_c02700 0.69 -0.6 258,593 + PGA1_c02700 0.72 -2.6 258,600 + PGA1_c02700 0.73 -1.5 258,601 - PGA1_c02700 0.73 -0.3 258,609 - PGA1_c02700 0.74 -0.6 258,620 - PGA1_c02700 0.75 -0.7 258,653 + PGA1_c02700 0.78 -3.0 258,688 + PGA1_c02700 0.82 -0.3 258,718 + PGA1_c02700 0.85 -0.4 258,726 - PGA1_c02700 0.86 -1.5 258,733 - PGA1_c02700 0.86 -1.3 258,746 + PGA1_c02700 0.87 +0.1 258,764 + PGA1_c02700 0.89 -2.7 258,877 + -0.3 258,920 - -1.1 258,939 - -1.8 258,939 - -0.2 258,982 - +1.3 259,026 - -1.5 259,032 + -0.2 259,032 + +0.0 259,034 + -0.7 259,042 - -2.1 259,049 + +0.8 259,074 - +0.2 259,090 + +0.3 259,125 - -0.8 259,191 + -0.1 259,226 + +0.1 259,244 + -1.0 259,252 - -0.2 259,279 + PGA1_c02710 0.11 +0.6 259,324 + PGA1_c02710 0.14 +2.4 259,324 + PGA1_c02710 0.14 +0.5 259,376 + PGA1_c02710 0.18 -1.6 259,384 - PGA1_c02710 0.19 +0.2 259,421 - PGA1_c02710 0.22 +1.7 259,443 - PGA1_c02710 0.23 -0.8 259,496 + PGA1_c02710 0.27 -0.9 259,503 + PGA1_c02710 0.28 +0.3 259,551 + PGA1_c02710 0.32 -0.1 259,553 + PGA1_c02710 0.32 +0.0 259,553 + PGA1_c02710 0.32 -0.7 259,561 + PGA1_c02710 0.32 -0.7 259,561 + PGA1_c02710 0.32 -0.4 259,569 - PGA1_c02710 0.33 +1.8 259,569 - PGA1_c02710 0.33 -1.3 259,569 - PGA1_c02710 0.33 +0.7 259,617 - PGA1_c02710 0.37 +0.8 259,620 + PGA1_c02710 0.37 +1.0 259,645 + PGA1_c02710 0.39 -2.5 259,678 + PGA1_c02710 0.41 +1.3 259,693 + PGA1_c02710 0.42 +1.5 259,711 - PGA1_c02710 0.44 +1.5 259,767 + PGA1_c02710 0.48 -0.2 259,767 + PGA1_c02710 0.48 -0.8 259,767 + PGA1_c02710 0.48 +1.0 259,767 + PGA1_c02710 0.48 -0.4 259,809 - PGA1_c02710 0.51 -0.2
Or see this region's nucleotide sequence