Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13630

Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium acetate 20 mM
1,407,453	-				-0.5
1,407,504	+				-0.2
1,407,514	+				+0.3
1,407,514	+				+1.8
1,407,514	+				-0.7
1,407,642	+				-0.7
1,407,650	-				+0.2
1,407,672	-				+0.5
1,407,676	-				+0.0
1,407,683	-				+1.8
1,407,695	+				+0.8
1,407,735	+				-0.2
1,407,735	+				+1.7
1,407,735	+				-0.3
1,407,737	-				-0.8
1,407,743	-				-0.9
1,407,743	-				-0.5
1,407,743	-				+0.2
1,407,743	-				+1.8
1,407,743	-				+0.4
1,407,743	-				-0.4
1,407,747	-				-0.4
1,407,754	+				+0.5
1,407,754	+				+0.6
1,407,754	+				-1.0
1,407,754	+				+1.0
1,407,754	+				+1.2
1,407,754	+				-0.0
1,407,762	-				-0.4
1,407,762	-				+1.6
1,407,762	-				-2.2
1,407,762	-				+0.4
1,407,779	+				+0.1
1,407,782	+				-0.3
1,407,803	+				+1.7
1,407,807	-				-0.2
1,407,843	+		PGA1_c13620	0.23	+0.5
1,407,848	+		PGA1_c13620	0.26	-1.3
1,407,905	+		PGA1_c13620	0.60	+0.5
1,407,926	+		PGA1_c13620	0.73	+0.4
1,407,929	-		PGA1_c13620	0.74	-0.2
1,407,934	-		PGA1_c13620	0.77	+0.4
1,407,934	-		PGA1_c13620	0.77	-1.1
1,407,983	-				-1.0
1,407,992	+				+2.3
1,407,992	+				-1.7
1,407,992	+				-0.1
1,408,000	-				+0.7
1,408,038	+				-1.8
1,408,059	+				-0.6
1,408,059	+				+0.3
1,408,059	+				-0.1
1,408,067	-				+1.0
1,408,110	+				-0.8
1,408,149	+				-0.6
1,408,149	+				+0.0
1,408,157	-				-1.4
1,408,157	-				+0.4
1,408,177	+				+0.4
1,408,182	+				-0.6
1,408,244	-				+0.5
1,408,248	+				-1.2
1,408,248	+				-0.2
1,408,248	+				-1.6
1,408,248	+				+0.2
1,408,248	+				-0.4
1,408,253	+				-0.8
1,408,255	+				+1.0
1,408,256	-				+0.7
1,408,256	-				+2.0
1,408,256	-				+0.8
1,408,256	-				+0.4
1,408,256	-				-2.6
1,408,256	-				-1.3
1,408,256	-				+0.7
1,408,256	-				+1.0
1,408,256	-				+1.4
1,408,260	+				-0.6
1,408,277	-		PGA1_c13630	0.11	+0.4
1,408,283	-		PGA1_c13630	0.11	+0.6
1,408,325	+		PGA1_c13630	0.16	+0.3
1,408,325	+		PGA1_c13630	0.16	+0.7
1,408,333	-		PGA1_c13630	0.17	+0.2
1,408,357	-		PGA1_c13630	0.19	+0.7
1,408,401	-		PGA1_c13630	0.24	-0.1
1,408,403	-		PGA1_c13630	0.24	+0.0
1,408,427	+		PGA1_c13630	0.27	+0.7
1,408,427	+		PGA1_c13630	0.27	+0.1
1,408,435	-		PGA1_c13630	0.27	-0.3
1,408,435	-		PGA1_c13630	0.27	-0.6
1,408,435	-		PGA1_c13630	0.27	+0.4
1,408,435	-		PGA1_c13630	0.27	+1.3
1,408,442	+		PGA1_c13630	0.28	+1.1
1,408,442	+		PGA1_c13630	0.28	+0.1
1,408,442	+		PGA1_c13630	0.28	+1.6
1,408,442	+		PGA1_c13630	0.28	-0.3
1,408,447	+		PGA1_c13630	0.29	+0.4
1,408,450	-		PGA1_c13630	0.29	-1.5
1,408,450	-		PGA1_c13630	0.29	+0.3
1,408,450	-		PGA1_c13630	0.29	+0.8
1,408,450	-		PGA1_c13630	0.29	-0.4
1,408,477	-		PGA1_c13630	0.32	+0.1
1,408,524	+		PGA1_c13630	0.37	+0.5
1,408,553	-		PGA1_c13630	0.40	-0.4
1,408,575	-		PGA1_c13630	0.42	+0.1
1,408,621	-		PGA1_c13630	0.47	-0.6
1,408,651	+		PGA1_c13630	0.50	-0.6
1,408,659	-		PGA1_c13630	0.51	+0.6
1,408,674	-		PGA1_c13630	0.53	+1.1
1,408,701	+		PGA1_c13630	0.55	+0.7
1,408,706	+		PGA1_c13630	0.56	-1.8
1,408,711	+		PGA1_c13630	0.57	+0.7
1,408,713	+		PGA1_c13630	0.57	+0.8
1,408,714	-		PGA1_c13630	0.57	-0.8
1,408,716	-		PGA1_c13630	0.57	+2.0
1,408,719	-		PGA1_c13630	0.57	+1.2
1,408,721	-		PGA1_c13630	0.58	-0.0
1,408,749	+		PGA1_c13630	0.61	+0.7
1,408,758	-		PGA1_c13630	0.61	+1.6
1,408,775	-		PGA1_c13630	0.63	-0.3
1,408,792	-		PGA1_c13630	0.65	-1.4
1,408,815	+		PGA1_c13630	0.68	+0.9
1,408,815	+		PGA1_c13630	0.68	-2.0
1,408,820	+		PGA1_c13630	0.68	-2.3
1,408,820	+		PGA1_c13630	0.68	+0.9
1,408,820	+		PGA1_c13630	0.68	+0.1
1,408,828	-		PGA1_c13630	0.69	+0.4
1,408,892	-		PGA1_c13630	0.76	-1.1
1,408,892	-		PGA1_c13630	0.76	-0.4
1,409,043	+				-1.2
1,409,043	+				-1.6
1,409,045	+				-0.8
1,409,045	+				-1.2
1,409,051	-				-1.1
1,409,053	-				+0.6
1,409,058	-				-0.1
1,409,075	+				-0.4
1,409,075	+				-0.2
1,409,075	+				-0.3
1,409,075	+				-1.0
1,409,075	+				+1.0
1,409,075	+				+0.0
1,409,075	+				-0.0
1,409,075	+				+0.9
1,409,075	+				-0.8
1,409,075	+				+0.0
1,409,075	+				+0.6
1,409,083	-				-0.8
1,409,083	-				-0.5
1,409,083	-				-1.0
1,409,083	-				+0.4
1,409,083	-				+0.1
1,409,083	-				+1.0
1,409,083	-				-1.1
1,409,083	-				-0.4
1,409,083	-				+0.2
1,409,083	-				-0.6
1,409,083	-				-1.2
1,409,083	-				+1.3
1,409,083	-				+0.8
1,409,083	-				-0.2
1,409,083	-				-0.9
1,409,083	-				+0.3
1,409,083	-				+0.6
1,409,083	-				+0.4
1,409,092	-				-0.2
1,409,106	-				+0.5
1,409,166	+				+0.5
1,409,176	+		PGA1_c13640	0.11	+0.2
1,409,176	+		PGA1_c13640	0.11	-0.5
1,409,184	-		PGA1_c13640	0.14	+1.0
1,409,205	-		PGA1_c13640	0.22	-0.1
1,409,230	-		PGA1_c13640	0.32	-0.2
1,409,235	-		PGA1_c13640	0.34	-0.0
1,409,285	-		PGA1_c13640	0.53	-0.1
1,409,305	+		PGA1_c13640	0.61	+1.7
1,409,319	+		PGA1_c13640	0.66	+0.2
1,409,319	+		PGA1_c13640	0.66	+1.4
1,409,327	-		PGA1_c13640	0.69	-0.8
1,409,327	-		PGA1_c13640	0.69	-0.2
1,409,341	-		PGA1_c13640	0.74	+0.0
1,409,354	-		PGA1_c13640	0.79	+0.2
1,409,374	+		PGA1_c13640	0.87	+1.0
1,409,392	+				-0.2
1,409,392	+				+0.0
1,409,400	-				-1.8
1,409,401	+				+0.3
1,409,401	+				+0.6
1,409,406	+				+0.8
1,409,409	-				+0.9
1,409,416	+				+0.6
1,409,416	+				+1.4
1,409,426	-				-0.4
1,409,455	+				+0.5
1,409,497	+		PGA1_c13650	0.14	+0.2
1,409,530	+		PGA1_c13650	0.19	-0.3
1,409,532	-		PGA1_c13650	0.19	+0.1
1,409,543	-		PGA1_c13650	0.21	-0.6
1,409,568	-		PGA1_c13650	0.25	-0.1
1,409,578	+		PGA1_c13650	0.26	-0.2
1,409,578	+		PGA1_c13650	0.26	-0.5
1,409,586	-		PGA1_c13650	0.27	-0.8
1,409,586	-		PGA1_c13650	0.27	+1.1
1,409,638	+		PGA1_c13650	0.35	+1.2
1,409,655	-		PGA1_c13650	0.37	+0.3
1,409,689	+		PGA1_c13650	0.42	-0.1
1,409,740	-		PGA1_c13650	0.50	+0.4
1,409,749	+		PGA1_c13650	0.51	-0.2
1,409,749	+		PGA1_c13650	0.51	+0.9
1,409,749	+		PGA1_c13650	0.51	+1.0
1,409,749	+		PGA1_c13650	0.51	-1.2
1,409,757	-		PGA1_c13650	0.52	-0.1
1,409,757	-		PGA1_c13650	0.52	+0.8
1,409,757	-		PGA1_c13650	0.52	-0.9
1,409,757	-		PGA1_c13650	0.52	-2.2
1,409,757	-		PGA1_c13650	0.52	+1.0
1,409,757	-		PGA1_c13650	0.52	-0.2
1,409,757	-		PGA1_c13650	0.52	+0.4
1,409,757	-		PGA1_c13650	0.52	-0.6
1,409,770	+		PGA1_c13650	0.54	+0.9
1,409,770	+		PGA1_c13650	0.54	+0.9
1,409,770	+		PGA1_c13650	0.54	+1.0
1,409,780	-		PGA1_c13650	0.56	-1.4
1,409,788	-		PGA1_c13650	0.57	-0.4
1,409,845	+		PGA1_c13650	0.65	-0.1
1,409,869	-		PGA1_c13650	0.69	+0.8
1,409,872	-		PGA1_c13650	0.69	+0.5
1,409,894	-		PGA1_c13650	0.73	+0.1
1,409,902	+		PGA1_c13650	0.74	+1.1
1,409,910	-		PGA1_c13650	0.75	-0.1
1,409,910	-		PGA1_c13650	0.75	-0.4
1,409,912	-		PGA1_c13650	0.75	-0.2
1,409,919	-		PGA1_c13650	0.76	-0.7
1,409,968	+		PGA1_c13650	0.83	-0.0
1,409,976	-		PGA1_c13650	0.85	-0.4
1,409,986	+		PGA1_c13650	0.86	-0.0
1,410,007	+		PGA1_c13650	0.89	-0.7
1,410,032	+				+0.4
1,410,032	+				-0.2
1,410,032	+				-1.6
1,410,042	+				-0.6
1,410,050	-				+0.8
1,410,074	+				+0.8
1,410,074	+				-0.5
1,410,079	+				-0.4
1,410,079	+				+0.6
1,410,079	+				+0.1
1,410,082	-				-1.6
1,410,082	-				+0.8
1,410,087	-				-0.9
1,410,087	-				+0.1
1,410,087	-				+0.6
1,410,087	-				-0.4
1,410,088	+				+0.9
1,410,089	+				-0.1
1,410,096	-				-0.6
1,410,096	-				+1.5