Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS24170

Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS24165 and RS_RS24170 are separated by 24 nucleotidesRS_RS24170 and RS_RS24175 overlap by 8 nucleotidesRS_RS24175 and RS_RS24180 are separated by 1 nucleotides RS_RS24165: RS_RS24165 - TolC family protein, at 1,839,989 to 1,841,467 _RS24165 RS_RS24170: RS_RS24170 - ABC transporter ATP-binding protein, at 1,841,492 to 1,842,835 _RS24170 RS_RS24175: RS_RS24175 - ABC transporter ATP-binding protein, at 1,842,828 to 1,843,610 _RS24175 RS_RS24180: RS_RS24180 - ABC transporter permease, at 1,843,612 to 1,844,874 _RS24180 Position (kb) 1841 1842 1843Strain fitness (log2 ratio) -2 -1 0 1at 1840.548 kb on - strand, within RS_RS24165at 1840.548 kb on - strand, within RS_RS24165at 1840.775 kb on + strand, within RS_RS24165at 1840.830 kb on - strand, within RS_RS24165at 1841.693 kb on - strand, within RS_RS24170at 1841.882 kb on + strand, within RS_RS24170at 1842.204 kb on - strand, within RS_RS24170at 1843.076 kb on + strand, within RS_RS24175at 1843.200 kb on + strand, within RS_RS24175at 1843.201 kb on - strand, within RS_RS24175at 1843.637 kb on + strandat 1843.637 kb on + strandat 1843.638 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
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1,840,548 - RS_RS24165 0.38 -0.4
1,840,548 - RS_RS24165 0.38 +0.3
1,840,775 + RS_RS24165 0.53 +1.3
1,840,830 - RS_RS24165 0.57 +1.0
1,841,693 - RS_RS24170 0.15 -0.6
1,841,882 + RS_RS24170 0.29 -0.4
1,842,204 - RS_RS24170 0.53 -0.1
1,843,076 + RS_RS24175 0.32 -0.5
1,843,200 + RS_RS24175 0.48 -0.3
1,843,201 - RS_RS24175 0.48 +0.3
1,843,637 + +0.5
1,843,637 + +1.1
1,843,638 - -2.0

Or see this region's nucleotide sequence