Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20155

Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20150 and RS_RS20155 are separated by 510 nucleotidesRS_RS20155 and RS_RS20160 are separated by 52 nucleotides RS_RS20150: RS_RS20150 - hypothetical protein, at 772,047 to 772,697 _RS20150 RS_RS20155: RS_RS20155 - lipopolysaccharide heptosyltransferase I, at 773,208 to 774,206 _RS20155 RS_RS20160: RS_RS20160 - acyltransferase, at 774,259 to 775,386 _RS20160 Position (kb) 773 774 775Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 772.220 kb on - strand, within RS_RS20150at 772.220 kb on - strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.963 kb on + strandat 772.964 kb on - strandat 773.025 kb on + strandat 773.026 kb on - strandat 773.026 kb on - strandat 773.026 kb on - strandat 773.026 kb on - strandat 773.026 kb on - strandat 773.026 kb on - strandat 773.028 kb on + strandat 773.029 kb on - strandat 773.029 kb on - strandat 773.029 kb on - strandat 773.029 kb on - strandat 773.042 kb on + strandat 773.042 kb on + strandat 773.043 kb on - strandat 773.153 kb on + strandat 773.153 kb on + strandat 773.154 kb on - strandat 773.159 kb on + strandat 773.159 kb on + strandat 773.160 kb on - strandat 773.160 kb on - strandat 773.160 kb on - strandat 773.160 kb on - strandat 773.160 kb on - strandat 773.160 kb on - strandat 773.228 kb on - strandat 773.466 kb on + strand, within RS_RS20155at 773.467 kb on - strand, within RS_RS20155at 773.496 kb on + strand, within RS_RS20155at 773.497 kb on - strand, within RS_RS20155at 773.497 kb on - strand, within RS_RS20155at 773.589 kb on + strand, within RS_RS20155at 773.590 kb on - strand, within RS_RS20155at 773.667 kb on + strand, within RS_RS20155at 773.668 kb on - strand, within RS_RS20155at 773.668 kb on - strand, within RS_RS20155at 773.692 kb on - strand, within RS_RS20155at 773.692 kb on - strand, within RS_RS20155at 774.228 kb on + strandat 774.359 kb on + strandat 774.448 kb on + strand, within RS_RS20160at 774.449 kb on - strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.499 kb on + strand, within RS_RS20160at 774.499 kb on + strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.725 kb on + strand, within RS_RS20160at 774.725 kb on + strand, within RS_RS20160at 774.725 kb on + strand, within RS_RS20160at 774.726 kb on - strand, within RS_RS20160at 774.726 kb on - strand, within RS_RS20160at 774.809 kb on + strand, within RS_RS20160at 774.810 kb on - strand, within RS_RS20160at 774.944 kb on + strand, within RS_RS20160at 774.945 kb on - strand, within RS_RS20160at 774.946 kb on + strand, within RS_RS20160at 774.959 kb on + strand, within RS_RS20160at 774.980 kb on + strand, within RS_RS20160at 774.980 kb on + strand, within RS_RS20160at 775.002 kb on - strand, within RS_RS20160at 775.002 kb on - strand, within RS_RS20160at 775.107 kb on - strand, within RS_RS20160

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
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772,220 - RS_RS20150 0.27 +0.2
772,220 - RS_RS20150 0.27 -0.3
772,242 + RS_RS20150 0.30 -0.3
772,242 + RS_RS20150 0.30 +0.0
772,242 + RS_RS20150 0.30 +0.0
772,242 + RS_RS20150 0.30 +0.3
772,381 - RS_RS20150 0.51 -0.1
772,381 - RS_RS20150 0.51 +1.0
772,381 - RS_RS20150 0.51 -0.4
772,381 - RS_RS20150 0.51 -1.3
772,963 + +0.2
772,964 - -1.3
773,025 + -0.2
773,026 - -0.5
773,026 - -0.5
773,026 - +0.7
773,026 - +0.4
773,026 - -0.3
773,026 - -1.0
773,028 + -0.1
773,029 - -0.8
773,029 - -0.4
773,029 - +0.4
773,029 - -0.3
773,042 + +0.7
773,042 + +0.2
773,043 - -0.5
773,153 + +0.2
773,153 + +0.6
773,154 - -0.4
773,159 + +0.1
773,159 + +0.4
773,160 - +1.1
773,160 - -0.1
773,160 - +0.6
773,160 - -0.3
773,160 - +1.1
773,160 - -1.1
773,228 - -3.8
773,466 + RS_RS20155 0.26 -2.0
773,467 - RS_RS20155 0.26 +1.2
773,496 + RS_RS20155 0.29 -0.9
773,497 - RS_RS20155 0.29 +0.7
773,497 - RS_RS20155 0.29 -2.5
773,589 + RS_RS20155 0.38 +0.8
773,590 - RS_RS20155 0.38 +0.2
773,667 + RS_RS20155 0.46 +0.6
773,668 - RS_RS20155 0.46 +0.6
773,668 - RS_RS20155 0.46 -1.2
773,692 - RS_RS20155 0.48 -0.1
773,692 - RS_RS20155 0.48 +0.9
774,228 + +0.1
774,359 + +0.2
774,448 + RS_RS20160 0.17 +0.0
774,449 - RS_RS20160 0.17 +0.0
774,497 + RS_RS20160 0.21 +0.5
774,497 + RS_RS20160 0.21 -1.1
774,497 + RS_RS20160 0.21 +0.6
774,497 + RS_RS20160 0.21 -1.0
774,497 + RS_RS20160 0.21 -0.6
774,497 + RS_RS20160 0.21 -0.1
774,497 + RS_RS20160 0.21 -0.4
774,497 + RS_RS20160 0.21 +0.2
774,498 - RS_RS20160 0.21 +0.2
774,498 - RS_RS20160 0.21 -0.3
774,498 - RS_RS20160 0.21 -0.5
774,498 - RS_RS20160 0.21 -0.4
774,499 + RS_RS20160 0.21 +0.5
774,499 + RS_RS20160 0.21 +1.2
774,500 - RS_RS20160 0.21 -2.5
774,500 - RS_RS20160 0.21 -0.6
774,500 - RS_RS20160 0.21 -0.4
774,500 - RS_RS20160 0.21 -0.3
774,500 - RS_RS20160 0.21 +0.9
774,725 + RS_RS20160 0.41 +0.0
774,725 + RS_RS20160 0.41 -1.4
774,725 + RS_RS20160 0.41 -0.3
774,726 - RS_RS20160 0.41 -0.5
774,726 - RS_RS20160 0.41 -1.0
774,809 + RS_RS20160 0.49 -0.3
774,810 - RS_RS20160 0.49 +0.9
774,944 + RS_RS20160 0.61 -0.6
774,945 - RS_RS20160 0.61 +0.9
774,946 + RS_RS20160 0.61 +0.2
774,959 + RS_RS20160 0.62 -0.1
774,980 + RS_RS20160 0.64 -0.9
774,980 + RS_RS20160 0.64 -0.8
775,002 - RS_RS20160 0.66 -0.7
775,002 - RS_RS20160 0.66 -1.0
775,107 - RS_RS20160 0.75 +0.4

Or see this region's nucleotide sequence