Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18890 and RS_RS18895 overlap by 4 nucleotides RS_RS18895 and RS_RS18900 overlap by 1 nucleotides RS_RS18900 and RS_RS18905 overlap by 13 nucleotides
RS_RS18890: RS_RS18890 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 466,064 to 467,251
_RS18890
RS_RS18895: RS_RS18895 - membrane protein, at 467,248 to 469,665
_RS18895
RS_RS18900: RS_RS18900 - outer membrane lipoprotein carrier protein LolA, at 469,665 to 470,297
_RS18900
RS_RS18905: RS_RS18905 - acyl-CoA thioesterase, at 470,285 to 470,719
_RS18905
Position (kb) 467
468
469
470 Strain fitness (log2 ratio) -2
-1
0
1 at 466.288 kb on + strand, within RS_RS18890 at 466.289 kb on - strand, within RS_RS18890 at 466.495 kb on + strand, within RS_RS18890 at 466.495 kb on + strand, within RS_RS18890 at 466.496 kb on - strand, within RS_RS18890 at 466.496 kb on - strand, within RS_RS18890 at 466.496 kb on - strand, within RS_RS18890 at 466.806 kb on - strand, within RS_RS18890 at 466.806 kb on - strand, within RS_RS18890 at 466.893 kb on + strand, within RS_RS18890 at 466.893 kb on + strand, within RS_RS18890 at 467.047 kb on - strand, within RS_RS18890 at 467.226 kb on + strand at 467.227 kb on - strand at 467.227 kb on - strand at 467.474 kb on + strand at 467.474 kb on + strand at 467.474 kb on + strand at 467.475 kb on - strand at 467.549 kb on + strand, within RS_RS18895 at 467.745 kb on + strand, within RS_RS18895 at 467.745 kb on + strand, within RS_RS18895 at 467.745 kb on + strand, within RS_RS18895 at 467.746 kb on - strand, within RS_RS18895 at 467.816 kb on + strand, within RS_RS18895 at 467.816 kb on + strand, within RS_RS18895 at 468.103 kb on + strand, within RS_RS18895 at 468.103 kb on + strand, within RS_RS18895 at 468.160 kb on + strand, within RS_RS18895 at 468.161 kb on - strand, within RS_RS18895 at 468.161 kb on - strand, within RS_RS18895 at 468.161 kb on - strand, within RS_RS18895 at 468.660 kb on - strand, within RS_RS18895 at 468.671 kb on + strand, within RS_RS18895 at 468.672 kb on - strand, within RS_RS18895 at 468.911 kb on + strand, within RS_RS18895 at 468.912 kb on - strand, within RS_RS18895 at 469.203 kb on - strand, within RS_RS18895 at 469.298 kb on + strand, within RS_RS18895 at 469.298 kb on + strand, within RS_RS18895 at 469.571 kb on + strand at 469.572 kb on - strand at 469.572 kb on - strand at 469.603 kb on + strand at 469.603 kb on + strand at 469.783 kb on + strand, within RS_RS18900 at 469.783 kb on + strand, within RS_RS18900 at 469.783 kb on + strand, within RS_RS18900 at 469.784 kb on - strand, within RS_RS18900 at 469.784 kb on - strand, within RS_RS18900 at 469.784 kb on - strand, within RS_RS18900 at 469.900 kb on + strand, within RS_RS18900 at 469.901 kb on - strand, within RS_RS18900 at 469.901 kb on - strand, within RS_RS18900 at 469.901 kb on - strand, within RS_RS18900 at 470.038 kb on + strand, within RS_RS18900 at 470.038 kb on + strand, within RS_RS18900 at 470.213 kb on + strand, within RS_RS18900 at 470.491 kb on - strand, within RS_RS18905 at 470.509 kb on - strand, within RS_RS18905 at 470.613 kb on + strand, within RS_RS18905 at 470.614 kb on - strand, within RS_RS18905 at 470.622 kb on + strand, within RS_RS18905 at 470.622 kb on + strand, within RS_RS18905
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi remove 466,288 + RS_RS18890 0.19 +0.2 466,289 - RS_RS18890 0.19 -0.2 466,495 + RS_RS18890 0.36 -0.1 466,495 + RS_RS18890 0.36 -0.8 466,496 - RS_RS18890 0.36 -0.4 466,496 - RS_RS18890 0.36 -1.2 466,496 - RS_RS18890 0.36 +0.8 466,806 - RS_RS18890 0.62 -1.4 466,806 - RS_RS18890 0.62 -0.2 466,893 + RS_RS18890 0.70 -0.2 466,893 + RS_RS18890 0.70 -0.1 467,047 - RS_RS18890 0.83 -1.0 467,226 + -0.1 467,227 - -1.9 467,227 - -0.7 467,474 + -0.0 467,474 + +0.3 467,474 + +0.5 467,475 - +1.2 467,549 + RS_RS18895 0.12 -1.6 467,745 + RS_RS18895 0.21 -0.9 467,745 + RS_RS18895 0.21 -0.0 467,745 + RS_RS18895 0.21 +0.3 467,746 - RS_RS18895 0.21 -0.2 467,816 + RS_RS18895 0.23 -0.6 467,816 + RS_RS18895 0.23 +0.1 468,103 + RS_RS18895 0.35 -0.2 468,103 + RS_RS18895 0.35 -0.6 468,160 + RS_RS18895 0.38 -0.2 468,161 - RS_RS18895 0.38 -0.7 468,161 - RS_RS18895 0.38 +0.8 468,161 - RS_RS18895 0.38 -0.7 468,660 - RS_RS18895 0.58 +0.0 468,671 + RS_RS18895 0.59 -0.6 468,672 - RS_RS18895 0.59 +0.7 468,911 + RS_RS18895 0.69 -0.2 468,912 - RS_RS18895 0.69 -1.4 469,203 - RS_RS18895 0.81 +0.4 469,298 + RS_RS18895 0.85 -0.2 469,298 + RS_RS18895 0.85 -0.5 469,571 + -0.4 469,572 - -0.6 469,572 - -0.0 469,603 + +0.1 469,603 + +0.1 469,783 + RS_RS18900 0.19 -0.6 469,783 + RS_RS18900 0.19 -0.2 469,783 + RS_RS18900 0.19 -0.8 469,784 - RS_RS18900 0.19 +0.1 469,784 - RS_RS18900 0.19 -0.5 469,784 - RS_RS18900 0.19 -0.8 469,900 + RS_RS18900 0.37 -0.5 469,901 - RS_RS18900 0.37 -0.1 469,901 - RS_RS18900 0.37 +0.1 469,901 - RS_RS18900 0.37 -0.6 470,038 + RS_RS18900 0.59 +0.8 470,038 + RS_RS18900 0.59 +1.0 470,213 + RS_RS18900 0.87 -0.3 470,491 - RS_RS18905 0.47 +0.7 470,509 - RS_RS18905 0.51 -1.4 470,613 + RS_RS18905 0.75 -0.2 470,614 - RS_RS18905 0.76 +0.4 470,622 + RS_RS18905 0.77 +0.3 470,622 + RS_RS18905 0.77 +0.2
Or see this region's nucleotide sequence